PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g13053.1.p
Common NameBRADI_5g13053
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 480aa    MW: 49773.1 Da    PI: 5.8883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g13053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05298320123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C+k F++   L  H+ +H
  Bradi5g13053.1.p 298 FVCPRCDKKFPTYQALGGHMASH 320
                       89******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-7296320No hitNo description
PROSITE profilePS501579.66298325IPR007087Zinc finger, C2H2
SMARTSM003550.0047298320IPR015880Zinc finger, C2H2-like
PfamPF139129.3E-11298321IPR007087Zinc finger, C2H2
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
SuperFamilySSF576671.33E-7384411No hitNo description
PfamPF139123.7E-10388412IPR007087Zinc finger, C2H2
SMARTSM003550.34389411IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280391411IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MAARKAYHLQ AAEAAAANNP PMKVAPRKDV QAQAAAELSV NWTVTGKRGR LPLASAGAAG  60
SAASSSSVTT ALDLESSFCS EDEEAAMILV QLSGQEERGP GDDESEEEML VPVAEHQIAP  120
AAVSEHDIVQ QADRLPAEHV AGVQDVAMLD ADAPEPEVEQ PMVPDDHVSG AAGASALLPM  180
MPGAHVSGGA ALQVQQADKC SAPPMEHTFG IITESSLAAA IEQAKKAAAA ASSSEVKKGK  240
LVLSDANAMK PMKKLRLQDI IQLQAPAPHD PQPSRATESF LRTPTRPRIP SPASTRRFVC  300
PRCDKKFPTY QALGGHMASH NRANKYGADG PQHQQLVAQL AVARAAQQSL RASNANTAGT  360
GTTNSGRRSM TNLPPPPKEP ILLAPPAVHP CSRCELVFRT GQALGGHMRR HWIADKVRAD  420
AAEARAAMDA AAGEAVPAAE AAVQAAAAEA VVAAAASVPA AAPRGEPLDF DLNEMPGEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g13053.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311827.10.0uncharacterized protein LOC112269383
TrEMBLA0A0Q3IAF10.0A0A0Q3IAF1_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Representative plantOGRP1097248