PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g12437.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27378.1 Da PI: 9.0256 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.8 | 2.9e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsstg+lyeyss Bradi5g12437.1.p 10 RIDNSTSRQVTFSKRRNGIFKKAKELGILCDAEVGLVIFSSTGRLYEYSS 59 8***********************************************96 PP | |||||||
2 | K-box | 89.6 | 5.7e-30 | 76 | 170 | 4 | 98 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ + + +++ + +q+e+a L+++++nLq+++R+l+G+dL+ L +keLq Le+qLe sl+ iR+kK++ll+++i+el +k +++en +L k Bradi5g12437.1.p 76 QQPVTNPNSELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKELQTLENQLELSLRCIRTKKDQLLIDEIHELNRKGSLVHQENVELYK 168 55666889999*********************************************************************************9 PP K-box 97 kl 98 k+ Bradi5g12437.1.p 169 KV 170 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.497 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.05E-44 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 7.98E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.4E-28 | 82 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.587 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELGILCD AEVGLVIFSS TGRLYEYSSS 60 SMKSVIDRYG RAKEEQQPVT NPNSELKFWQ REAASLRQQL HNLQENHRQL MGQDLSGLGV 120 KELQTLENQL ELSLRCIRTK KDQLLIDEIH ELNRKGSLVH QENVELYKKV NLIRQENVEL 180 YKKLSETEAA NEVNQDSRPP YNFVEDANVH VHLELNLPQP QNSIEHTAPP KLGLQLNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-20 | 1 | 83 | 1 | 83 | MEF2C |
5f28_B | 2e-20 | 1 | 83 | 1 | 83 | MEF2C |
5f28_C | 2e-20 | 1 | 83 | 1 | 83 | MEF2C |
5f28_D | 2e-20 | 1 | 83 | 1 | 83 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00410 | DAP | Transfer from AT3G57230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g12437.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370732 | 0.0 | AK370732.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2116B15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579908.1 | 1e-175 | MADS-box transcription factor 27 isoform X2 | ||||
Swissprot | Q6EP49 | 1e-138 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A0Q3E5K4 | 1e-174 | A0A0Q3E5K4_BRADI; Uncharacterized protein | ||||
STRING | OB04G22330.1 | 1e-149 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-103 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g12437.1.p |
Publications ? help Back to Top | |||
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