PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g12170.1.p
Common NameBRADI_5g12170
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 401aa    MW: 44145.2 Da    PI: 4.5936
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g12170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.15.4e-20185234152
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                       kpr+ Wt+eLH++F+ea + LG  +kA+Pk+i e+m+v+ +++++v+SHLQ+
  Bradi5g12170.1.p 185 KPRVTWTTELHDKFLEAFNWLG--DKAVPKRICEMMNVDYISRHNVASHLQQ 234
                       79*******************4..89*************************6 PP
2Response_reg52.23.4e-18141191106
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl +d++++ +++l+  l++ +y++v+++ d++ al+ l+e +  +Dl++  + mp+md+++ll++i+ e   +p+ v++a+++ e++ + ++
  Bradi5g12170.1.p  14 VLAIDKDRVCLKILQATLRRCNYNNVTSVMDAKTALQRLREAKdpFDLVISELHMPDMDAFKLLRHIAVEL-GIPVNVLSAYEDRETVMKGFS 105
                       7899***********************************998889**********************7755.8****************9996 PP

                       TTESEEEESS--HHH CS
      Response_reg  92 aGakdflsKpfdpee 106
                        Ga  +l+Kp + ++
  Bradi5g12170.1.p 106 -GACCYLAKPASTKK 119
                       .99999999987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-2511135No hitNo description
SuperFamilySSF521726.97E-2311128IPR011006CheY-like superfamily
SMARTSM004485.1E-2012124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.31813128IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.9E-1414121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.53E-1515124No hitNo description
Gene3DG3DSA:1.10.10.604.0E-18183234IPR009057Homeodomain-like
SuperFamilySSF466895.91E-13183235IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-20185235IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAAAGDEIWA GMRVLAIDKD RVCLKILQAT LRRCNYNNVT SVMDAKTALQ RLREAKDPFD  60
LVISELHMPD MDAFKLLRHI AVELGIPVNV LSAYEDRETV MKGFSGACCY LAKPASTKKF  120
KNVLGRKGEA RNHDNSDNDD ADHNVQSGIA QAEQGAKTPS KNSMRNRNYA GDDYDEKNKE  180
NSGKKPRVTW TTELHDKFLE AFNWLGDKAV PKRICEMMNV DYISRHNVAS HLQQTSLGPS  240
SANIPKINQL TSFVGASSCL VPTAQNDLQN PMVAFVSNTT PMAGLNEKMS PFNIGSNTSS  300
VEMSNGNFAP DNSATMTQIV NGLSNNYTLP NIEEESSVVS TQKLNGGDDV GFLPVQEDMA  360
DQEGLDGQSN DNTEFPWDDI LAMDDQNFSQ DNDLLNGDWF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-15184234455ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g12170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311819.15e-90two-component response regulator ORR24
SwissprotA2X1N22e-57ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8052e-57ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0Q3E9930.0A0A0Q3E993_BRADI; Uncharacterized protein
STRINGBRADI5G12170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2274825
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.16e-53response regulator 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]