PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g12160.1.p
Common NameBRADI_5g12160
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 571aa    MW: 62903.7 Da    PI: 6.0896
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g12160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.57.1e-24189241155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr+ Wt+eLH++F+ea ++LG  +kA+Pk+i e+m+v+ +++++v+SHLQkYR+
  Bradi5g12160.1.p 189 KPRVTWTTELHHKFLEAFNRLG--DKAVPKRICEMMNVDYISRHNVASHLQKYRI 241
                       79*******************4..89****************************7 PP
2Response_reg64.55e-22141231109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl +d++++ +++l+  l + +y++v+++ d++ al+ l+e +  +Dl++  + mp++d+++ll++i+ e   +p+iv++a+++ e++ + l+
  Bradi5g12160.1.p  14 VLAIDKDRVCLKILEATLHRCNYNNVTSVMDAKTALQRLREAKdpFDLVISELHMPDIDAFKLLRHIAVEL-GIPVIVLSAYEDTETVMKGLS 105
                       7899***********************************998889**********************7755.8******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga  +l+Kp + e+l +
  Bradi5g12160.1.p 106 SGACCYLAKPASTEKLKN 123
                       ************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.7E-3411148No hitNo description
SuperFamilySSF521721.15E-2811137IPR011006CheY-like superfamily
SMARTSM004482.8E-2412125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.07913129IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-1714123IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.71E-1915129No hitNo description
SuperFamilySSF466892.69E-16187245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-23188245IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-22189241IPR006447Myb domain, plants
PfamPF002492.3E-7191240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MAAAGDEIWA GMRVLAIDKD RVCLKILEAT LHRCNYNNVT SVMDAKTALQ RLREAKDPFD  60
LVISELHMPD IDAFKLLRHI AVELGIPVIV LSAYEDTETV MKGLSSGACC YLAKPASTEK  120
LKNIWQHVLR RKGEARNHDN SDNDDDHNVQ SGIAQAEQGA KTPNKNSTRN RNNAGDDYHE  180
KNKENTGKKP RVTWTTELHH KFLEAFNRLG DKAVPKRICE MMNVDYISRH NVASHLQKYR  240
IYLQKQSDPS ARASMKWNSY SNMSNLESFK HYPASSIFAS SSSNNHFATQ PIQLGSTLKD  300
VLPPLPSVTS RKTEASANTL RCILLKTNEG TACSHLDYSF VNMPNDKMLE PVNQLPMQPL  360
ELVNQSSILM NAPATYVSGA LGDASKFPDL FGNFDNSWQT SLGPSLANIP KMNQLISFVG  420
DSSCQIPMAQ NELQNPMAAF ISNTTPMGGL NEQMTPFNIG SNTSSVEMSN GNFAPGSSSS  480
IILRNIHTDN SATMTRMLNG LSNNYALPNI QAESSVVSTQ KLNGGHDVGF LPVQEDTAGQ  540
EGLDDQLNDN TEFPLDDILA MDDQVIKDFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-18188247464ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g12160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311819.10.0two-component response regulator ORR24
TrEMBLA0A0Q3H4010.0A0A0Q3H401_BRADI; Uncharacterized protein
STRINGBRADI5G12160.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2274825
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-66response regulator 12