PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g11516.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 195aa MW: 22296.8 Da PI: 10.7478 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56 | 1.4e-17 | 34 | 115 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfYn+YAk++GF +++s+ ++ +++ +C++egk +++ ++ +++r ra +++gCka++ +k + dg +++++ eHnH+l+ Bradi5g11516.1.p 34 KFYNAYAKHTGFGLKRSQRNT-------YRSYIRCTREGKYTTSVRD-GERQRDRARKKIGCKAHMGLKVNGDGGCIIKSMHFEHNHQLS 115 6*************9987444.......68889************99.99999***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-13 | 34 | 115 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MKKNIAKNMQ APELPKNLIP IVGQHFSTFD EAFKFYNAYA KHTGFGLKRS QRNTYRSYIR 60 CTREGKYTTS VRDGERQRDR ARKKIGCKAH MGLKVNGDGG CIIKSMHFEH NHQLSLSLSM 120 LVLLHSHKRV NPTLQDYIKD LQLSNVKHVN IMSLLTRLSG GRDKLGCHNR DVLNMKAKNT 180 RKESADDVQI LFKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g11516.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014757782.1 | 3e-61 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A2K2CGN8 | 1e-142 | A0A2K2CGN8_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G47460.1 | 1e-114 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7609 | 10 | 43 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-12 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g11516.1.p |