PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g11315.1.p

Common Name

BRADI_5g11315

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 478aa MW: 54371.4 Da PI: 5.1129

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g11315.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.6	9.8e-19	134	259	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......................................tekerrtra 56 Yn+YA++ GFs++ ++s+ s ++ + k++fvC+k k+++ ++ +++r++++ Bradi5g11315.1.p 134 HYNAYARMKGFSIKSNTSRWSAFTNLVEKHQFVCNKFRKPKPIDDVagqtskagiystkvpreesssdeehraarteetlvmkkVVRKRKRES 226 6*************************************998887999******************************9989999999 PP FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++t+Ckak++ k+ dg+wev+ +++eHnHel Bradi5g11315.1.p 227 IKQTECKAKMTAKLI-DGRWEVIFFVNEHNHELI 259 *************.**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-16	134	259	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-33	382	476	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MLDLNEIPCD PDDAPQEGVE PAYCTPIAPV AVHEEVGESP ATIRIADNEP LIVAPIAEYN 60 TGVAEHNTIV AEDSTGVAEH NTIVAEDSTG VAEDTTRVAC EAPADAEQEL EYRSQPQEPF 120 LGMRFDTLAG AKEHYNAYAR MKGFSIKSNT SRWSAFTNLV EKHQFVCNKF RKPKPIDDVA 180 GQTSKAGIYS TKVPREESSS DEEHRAARTE ETLVMKKVVR KRKRESIKQT ECKAKMTAKL 240 IDGRWEVIFF VNEHNHELIT KPSLTKYLLS HKNISPEEED FLRILDDCNL QTGQMMQLMS 300 RFYANGFIVP YKTKTISNFR FKIRAERKGD DMAETVSYFI AKQKEDLSFY FNVKMDEEDR 360 VELLFWVDGA ARKAYTESYH DCISFDTTYL TNQYNMPFAP FIGINCHGQS FMLGYGFMRD 420 ETTSSFDWLF QQYLDAMGGQ APLNIITDQD NAMRASIVNM FPNTVLRNCR WHIMKKA*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MLDLNEIPCD PDDAPQEGVE PAYCTPIAPV AVHEEVGESP ATIRIADNEP LIVAPIAEYN  60
TGVAEHNTIV AEDSTGVAEH NTIVAEDSTG VAEDTTRVAC EAPADAEQEL EYRSQPQEPF  120
LGMRFDTLAG AKEHYNAYAR MKGFSIKSNT SRWSAFTNLV EKHQFVCNKF RKPKPIDDVA  180
GQTSKAGIYS TKVPREESSS DEEHRAARTE ETLVMKKVVR KRKRESIKQT ECKAKMTAKL  240
IDGRWEVIFF VNEHNHELIT KPSLTKYLLS HKNISPEEED FLRILDDCNL QTGQMMQLMS  300
RFYANGFIVP YKTKTISNFR FKIRAERKGD DMAETVSYFI AKQKEDLSFY FNVKMDEEDR  360
VELLFWVDGA ARKAYTESYH DCISFDTTYL TNQYNMPFAP FIGINCHGQS FMLGYGFMRD  420
ETTSSFDWLF QQYLDAMGGQ APLNIITDQD NAMRASIVNM FPNTVLRNCR WHIMKKA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	222	KVVRKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g11315.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233530.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0Q3E4T2	0.0	A0A0Q3E4T2_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7287	5	18
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-50	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi5g11315.1.p