PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g11295.1.p | ||||||||
Common Name | BRADI_5g11295, LOC100831921 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21112.4 Da PI: 4.7228 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 5e-18 | 19 | 69 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr +k +g+Wv+eIr p g ++r++lg+f +ae+Aa a++ a+++l+g Bradi5g11295.1.p 19 SQYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 69 78*****999.**********8...325*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.08E-20 | 19 | 79 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.18E-28 | 19 | 78 | No hit | No description |
Pfam | PF00847 | 2.0E-11 | 19 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.485 | 20 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-35 | 20 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-30 | 20 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-10 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-10 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEESSGKAQP PNNASVSQSQ YRGVRKRKWG KWVSEIRQPG TKTRIWLGSF ESAEMAAVAH 60 DVAALRLRGR DSAQLNFPGS VGRLPRPASS HPDDVRAAAA EAAELVRCEP ALVARREYEW 120 GSQDQEASRV EEVQVGGTRG SDEEFEVDSP RLWAEMAEAM LLDPPAWATA GASCEMDQAA 180 YCWSQGSLWD AY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-15 | 19 | 81 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-15 | 19 | 81 | 4 | 66 | ATERF1 |
3gcc_A | 2e-15 | 19 | 81 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g11295.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958135 | 1e-81 | EU958135.1 Zea mays clone 1674836 dehydration-responsive element-binding protein 1D mRNA, complete cds. | |||
GenBank | EU958160 | 1e-81 | EU958160.1 Zea mays clone 1675695 dehydration-responsive element-binding protein 1D mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581277.1 | 1e-137 | ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q9C9I2 | 2e-33 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A0Q3E8Z8 | 1e-136 | A0A0Q3E8Z8_BRADI; Uncharacterized protein | ||||
STRING | TRIUR3_32168-P1 | 2e-69 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g11295.1.p |
Entrez Gene | 100831921 |