PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g11270.1.p | ||||||||
Common Name | BRADI_5g11270, LOC100829055 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23289.9 Da PI: 8.2186 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.2 | 2.5e-24 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA+ELSvLC+a++ vi++s++gk+ye + Bradi5g11270.1.p 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCEADIGVIVISPHGKIYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 60.8 | 5.6e-21 | 77 | 173 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 ++ +s +++k + qqe+ L++ei+ Lq+ +R + Ge d++ ++l eLq Le++Le + ++Rs+K++++ ++ie l++ke l+ +n +L+ Bradi5g11270.1.p 77 AQAESSNQNKPQVIQQEVLLLRQEIDLLQKGLRYMYGEkDINHMNLDELQALESNLEIWVHNVRSTKMQIISREIEMLKNKEGILKAANDMLQ 169 45566788999**************************868***************************************************** PP K-box 96 kkle 99 +++ Bradi5g11270.1.p 170 ERII 173 9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.273 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.1E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-26 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.14E-34 | 2 | 74 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-22 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-24 | 81 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.441 | 87 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCE ADIGVIVISP HGKIYELATN 60 GNMGSLIERY KGSNTEAQAE SSNQNKPQVI QQEVLLLRQE IDLLQKGLRY MYGEKDINHM 120 NLDELQALES NLEIWVHNVR STKMQIISRE IEMLKNKEGI LKAANDMLQE RIIEQSGILG 180 TSSDTLIPQF PFHRNMESDY YF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g11270.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469330 | 0.0 | KF469330.1 Brachypodium distachyon MADS-box transcription factor 36 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288322.1 | 1e-149 | MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 7e-78 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 7e-78 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | I1IY59 | 1e-147 | I1IY59_BRADI; MADS-box transcription factor 36 | ||||
STRING | BRADI5G11270.1 | 1e-148 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 5e-57 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g11270.1.p |
Entrez Gene | 100829055 |
Publications ? help Back to Top | |||
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