PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g11247.1.p | ||||||||
Common Name | BRADI_5g11247, LOC100827838 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 37961.9 Da PI: 6.9363 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.7 | 3.9e-52 | 10 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppGfrFhPtdeel+ +yLkkk+ +k++l evi+evd++k+ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk Bradi5g11247.1.p 10 VPPGFRFHPTDEELLLYYLKKKIGFEKFDL-EVIREVDLNKIEPWDLQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDK 101 69****************************.99**************963433332566********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + + +++g++ktLvfy+grap+g+k+dW+mheyrle Bradi5g11247.1.p 102 CIRT-SYRKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLE 139 ***9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-59 | 6 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.388 | 10 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-27 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MADFSSSNGV PPGFRFHPTD EELLLYYLKK KIGFEKFDLE VIREVDLNKI EPWDLQERCR 60 IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR 120 GRAPHGQKSD WIMHEYRLEE IDEAQGGTSE DGWVVCRVFK KKCFFKIAGG GGGGEGSTSQ 180 SAEAGHGGGG HHQLAVTSPL AMASHYMHGM HQHPQYHQHQ HSSFYYSQMQ PPEAASYSHH 240 VQVQDLLTNH RPAADAGYDF SGLPVEHPAA GLDVGSSDGG DGLVAEGRDH TTNGAAADEQ 300 QQWQASMDGF SNGGGGGASA AVQQMSALNG SGQRGGEMDL WGYGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-54 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-54 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-54 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-54 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-54 | 10 | 162 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-54 | 10 | 162 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g11247.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971542 | 0.0 | EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579837.1 | 0.0 | protein BEARSKIN1 | ||||
Swissprot | Q9SV87 | 1e-106 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | I1IY55 | 0.0 | I1IY55_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G11247.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9297 | 30 | 46 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 6e-88 | NAC domain containing protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g11247.1.p |
Entrez Gene | 100827838 |
Publications ? help Back to Top | |||
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