PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g11180.1.p | ||||||||
Common Name | LOC100830698 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 148aa MW: 15594.4 Da PI: 8.0935 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00013 | 35 | 57 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C++ F+++ L H++ H Bradi5g11180.1.p 35 FACCYCPRKFRSSQALGGHQNAH 57 78******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.49E-5 | 34 | 61 | No hit | No description |
PROSITE profile | PS50157 | 10.034 | 35 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 37 | 57 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MDMGMGMGME REEGLNLSLS LQQSPTSPPR FQAVFACCYC PRKFRSSQAL GGHQNAHKLQ 60 RNLARRGREA TTALSLAVPP GDQQAGKAAG ADDPPRPADP DEAWRGDGGR IHRHRLQGTG 120 SGAASSGGAG RGNEELADEM IDLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g11180.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970407 | 6e-55 | EU970407.1 Zea mays clone 344595 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581274.2 | 1e-103 | uncharacterized protein LOC100830698 | ||||
TrEMBL | I1IY49 | 1e-102 | I1IY49_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G11180.1 | 1e-103 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6992 | 26 | 46 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 6e-14 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g11180.1.p |
Entrez Gene | 100830698 |