PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g10950.1.p | ||||||||
Common Name | BRADI_5g10950, LOC100826105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ARF | ||||||||
Protein Properties | Length: 647aa MW: 71904.1 Da PI: 5.9234 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++aee+ ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + Bradi5g10950.1.p 128 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGAEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLR--G 217 99*****************************7556666.59************************************************4..3 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++el+v+v+r+ Bradi5g10950.1.p 218 GNGELRVGVRRH 229 78999****996 PP | |||||||
2 | Auxin_resp | 99.7 | 3.9e-33 | 254 | 339 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe++++ err+sGt+vg+ + +++W +S W+sLk Bradi5g10950.1.p 254 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKKQNMSVGMRFKMKFEGDEALERRFSGTIVGMGStptMPSSQWADSDWKSLK 339 789*************************************************************997522267789********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-43 | 119 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-41 | 126 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.04E-22 | 126 | 228 | No hit | No description |
SMART | SM01019 | 3.3E-22 | 128 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.773 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-21 | 128 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.4E-32 | 254 | 339 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.7E-5 | 530 | 572 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.001 | 536 | 629 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 6.57E-10 | 539 | 614 | No hit | No description |
Pfam | PF02309 | 5.9E-8 | 584 | 627 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MAAAAMEMSN HAPGSAPGIC SDALFHELWH ACAGPLITVP RQGERVYYFP QGHIEQLEAS 60 TNQQLDQYLP MFNLPSKILC SVVNVELRTE ADSDEVYAQI MLQPQDEQSE LTSAGPPQEL 120 ERGTIHSFCK TLTASDTSTH GGFSVLRRHA EECLPQLDMS QNPPCQELVA KDLHGAEWHF 180 RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGGNG ELRVGVRRHM RQVNNMPSSV 240 ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSEFVVS VNKYLEAKKQ NMSVGMRFKM 300 KFEGDEALER RFSGTIVGMG STPTMPSSQW ADSDWKSLKV QWDEPSSILR PDRVSLWELE 360 PLDSANPQTP EPPLRNKRAR ALASPSVVPD LPPNFGLWKS PSEPSQTLSF SEPQRARELF 420 PTSIFSSTNV MFDQFYWPGR ETKDGSYAAS TNKVTAERKH EPTTTGGCRL FGIEISSTVE 480 ETQPVVTASV GDHDQTAASV DMDSSVLSQP SNINNSDAPA GSSERALLET QSRQVRSCTK 540 VIMKGMAVGR AVDLARLDGY GDLHRKLEEM FDIHGELCST LKRWQVVYAD DEDDMMLVGD 600 DPWDEFCGMV KRIYIYSYEE AKQLAPKAKT PVIDGATKSE WCELMT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 6 | 364 | 1 | 357 | Auxin response factor 1 |
4ldw_A | 0.0 | 6 | 364 | 1 | 357 | Auxin response factor 1 |
4ldw_B | 0.0 | 6 | 364 | 1 | 357 | Auxin response factor 1 |
4ldx_A | 0.0 | 6 | 364 | 1 | 357 | Auxin response factor 1 |
4ldx_B | 0.0 | 6 | 364 | 1 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g10950.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251666 | 0.0 | AK251666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf119n03, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239942.1 | 0.0 | auxin response factor 9 | ||||
Swissprot | Q0JCZ4 | 0.0 | ARFI_ORYSJ; Auxin response factor 9 | ||||
TrEMBL | I1IY20 | 0.0 | I1IY20_BRADI; Auxin response factor | ||||
STRING | BRADI5G10950.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1082 | 36 | 116 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g10950.1.p |
Entrez Gene | 100826105 |
Publications ? help Back to Top | |||
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