PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g09126.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 585aa    MW: 68231 Da    PI: 7.0193
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g09126.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.19.3e-2625117191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                       +fYn+YA e GFsvrks+ +  + n+ei+ r+fvCs++g+ree++ k ++++rr+r+ tr+gC+akl+v + k +g w v+++  eH+H+lap
  Bradi5g09126.1.p  25 EFYNSYALEKGFSVRKSYVEWDEANEEIILRKFVCSRKGSREEKHMKrEDRKRRPRNLTRVGCRAKLVVARVKeTGCWFVKDFIDEHTHPLAP 117
                       6*****************************************999886788999****************9999****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-2425117IPR004330FAR1 DNA binding domain
PfamPF105511.3E-30238329IPR018289MULE transposase domain
PROSITE profilePS5096610.373513552IPR007527Zinc finger, SWIM-type
SMARTSM005750.0085527554IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MVDESIDEYL DIVERTFGSE DDGFEFYNSY ALEKGFSVRK SYVEWDEANE EIILRKFVCS  60
RKGSREEKHM KREDRKRRPR NLTRVGCRAK LVVARVKETG CWFVKDFIDE HTHPLAPRDL  120
ACLLRSHRKI SDEQKADIVE MEISELRKHK IMDILVMQYG GYDEVGCTTR DIYNFCHLYK  180
QETVAAGDAQ TVIRDMMARQ EIDSNFFFKY LVDGEGHLKG FFWADSQSRL DYEVFGNVVV  240
FDSTYRTNKY NLPFVGLNHH RNTVVFGCGI ISHETSKSYE WMLRTFSAAM AQKHPISVIT  300
DGDLAMQRAI KVIWPDTIHR LCVWHIQQNI LHHLGDDLVK EEFRSFIYDH SPIEEHEKKW  360
FDFLERTKVT SEESWLHQMY QMRKLWCAPY LVGHCFLGLS SNQRSESLNS VLYTHVDGSM  420
ALFKILEHYE RCLSTRRLNE SILDIVALQS VPFTEVDASS LEKHAAQVFT PAMFALVRWS  480
TNAASNCTMI EILDADNLST YVVAKKDRRE KKFQVHCEVK EGSLDRISCS CRKLECLGTP  540
CSHILYVLGI LQEERLPKCC VPTRWTMSAK APFPKTRKNN MYDYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16078RKGSREEKHMKREDRKRRP
27378DRKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g09126.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314638.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2CG640.0A0A2K2CG64_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-97FAR1-related sequence 5