PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g08600.2.p | ||||||||
Common Name | BRADI_5g08600, LOC100846665 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Trihelix | ||||||||
Protein Properties | Length: 328aa MW: 35312.4 Da PI: 6.5795 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.9 | 4.1e-26 | 18 | 99 | 1 | 73 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 rWt+qe+l+Lie++r +e r r + ++ ++W++v++++r++g+er+p+qC+++w+nl+++ykki+e+e++ Bradi5g08600.2.p 18 RWTRQEILVLIEGKRVVEARGRGRGgrgagglagAEPTKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIREWERSLLL 99 8******************999532245566666*******************************************99744 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-5 | 18 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 7.7E-11 | 18 | 95 | No hit | No description |
PROSITE profile | PS50090 | 6.528 | 18 | 84 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MSGAGEGSGG GRAARLPRWT RQEILVLIEG KRVVEARGRG RGGRGAGGLA GAEPTKWAAV 60 AEYCRRHGVE RGPVQCRKRW SNLAGDYKKI REWERSLLLP SGGKEVSFWA MRNDARRERR 120 LPGFFDREVY DIIEGRGGSR NAAAQAQVVV VEEEGKEKPA QALNSGRGVP EEGLFTSSSA 180 SSEDDDDEAS VAPPAPVLPS PSPSPAPAHA VVAVTVPDKK NEAPVQDSSE KAATSKGKQQ 240 EQIMDDPPPE QGGQKRQRSD DTTGEATDLQ GQLIEILDQS SRMVAAQLEA QNINCQLDRE 300 QRKDQVSSLL SVLGKVADAL YRIADKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g08600.2.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362298 | 1e-120 | AK362298.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2004B10. | |||
GenBank | AK367735 | 1e-120 | AK367735.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2061F21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579647.1 | 0.0 | trihelix transcription factor ASR3 isoform X1 | ||||
TrEMBL | A0A0Q3E3I9 | 0.0 | A0A0Q3E3I9_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G08600.1 | 1e-170 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3915 | 26 | 48 | Representative plant | OGRP1747 | 13 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 8e-47 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g08600.2.p |
Entrez Gene | 100846665 |