PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g08537.2.p
Common NameBRADI_5g08537
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 334aa    MW: 36960 Da    PI: 7.1521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g08537.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000731638123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      +kC+ C+k +  +s+ + H + +
  Bradi5g08537.2.p 16 WKCERCSKKYAVQSDWRAHTKIC 38
                      58*****************9987 PP
2zf-C2H210.80.00164664523
                      TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  5 dCgksFsrksnLkrHirtH 23
                      dCg+ Fsrk+++ +H   +
  Bradi5g08537.2.p 46 DCGTIFSRKDSFITHRAFC 64
                      8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.1E-5437IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.17E-51160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
TGIKKHYSRK HGEKKWKCER CSKKYAVQSD WRAHTKICGT KEYRCDCGTI FSRKDSFITH  60
RAFCDALTED DSRINQSLAA MVGSLHGQQQ DIFPHTIPSA SSSPTDAVGN FSGHNQSSDN  120
CPRSLSPYTF IARGTSLFSN QILPDESSIP IDGSEPNSPF MSMSSPYISA TALLQKAAEM  180
GAKTSEDPIS PLLLKGFPNY FNTRGHIGIS SSILGTSTAN SARKKTVEDN NTYMNSLWAG  240
SCIRHNTVPL VGLQPFSMRV ENRSTNMVDE DHMQQNAHES IFGVRDIGLT QDFLGLGGNG  300
NIEMSDETYN RDTALSYSEE RQKSQQDNYS YHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-351275366Zinc finger protein JACKDAW
5b3h_F7e-351275366Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g08537.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311787.10.0protein indeterminate-domain 12-like
TrEMBLA0A2K2CFZ30.0A0A2K2CFZ3_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI5G08537.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-44indeterminate(ID)-domain 12