PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g08471.1.p | ||||||||
Common Name | BRADI_5g08471, LOC100844221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 27522.8 Da PI: 4.5713 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 40 | 90 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a+++l+g Bradi5g08471.1.p 40 TRYLGVRRRP-WGRYAAEIRDPAT---KDRHWLGTFDTAEEAAVAYDRAARSLRG 90 5799******.**********843...4*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.02E-29 | 40 | 99 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-21 | 41 | 98 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.535 | 41 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-11 | 41 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-33 | 41 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-28 | 41 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-8 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-8 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MNFSSYFFSS SSSSSSSSEK KSSSSSKRRQ QQQQPDANPT RYLGVRRRPW GRYAAEIRDP 60 ATKDRHWLGT FDTAEEAAVA YDRAARSLRG VRARTNFAYP DLPPGSSVTP YLSPDLTAAD 120 NGSVHDLLQP FYADPSAALK PTHGQSAPAA ADIGNEYLYG GAPDMSALMD DIAMPDDLPV 180 DSMDFSSSMY GGGNNGGGGG WCEASEFVGY SASAASGGGG HGVYFEEGYV HSPLFSPMPA 240 ADDAGADGFQ LGGSASSYYY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-18 | 42 | 97 | 6 | 62 | ATERF1 |
3gcc_A | 9e-18 | 42 | 97 | 6 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g08471.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728275 | 2e-84 | KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579639.1 | 0.0 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | A0A0Q3I8A0 | 0.0 | A0A0Q3I8A0_BRADI; Uncharacterized protein | ||||
STRING | Traes_2BL_5DC21F3CD.1 | 1e-112 | (Triticum aestivum) | ||||
STRING | Traes_2BL_970693C1F.1 | 1e-112 | (Triticum aestivum) | ||||
STRING | Traes_2BL_E7871AFBA.1 | 1e-112 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 4e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g08471.1.p |
Entrez Gene | 100844221 |