PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g08380.1.p
Common NameBRADI_5g08380, LOC100842811
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 286aa    MW: 30217.8 Da    PI: 10.3893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g08380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98e-2156105255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Bradi5g08380.1.p  56 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 105
                       7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-3355114IPR001471AP2/ERF domain
PROSITE profilePS5103224.71156113IPR001471AP2/ERF domain
SMARTSM003804.8E-3856119IPR001471AP2/ERF domain
CDDcd000181.86E-3156114No hitNo description
PfamPF008471.2E-1356105IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2256114IPR016177DNA-binding domain
PRINTSPR003671.2E-115768IPR001471AP2/ERF domain
PRINTSPR003671.2E-117995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVSALEHVIR APPGPDQQQQ GFYPATAAVP GQQQQQQQQI GLAAAAAAEE QGRKRHYRGV  60
RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE DAAIAYDEAA LRFKGTKAKL NFPERVQGRT  120
DLGFVVTRGI PDRSSLHHQQ HYPGSTAMRP PQQQQTVVPY PDLMRYAQLL QGAGGRPSGS  180
GADADAAARQ MMMVGAAGSG VMNLPFGPMS PSSTMTSSSS SSPQILDFTT QQLIRPGPRP  240
SSPAAAAAMS TGSGGAATSS STTTASPPPA SAWPYGAEQH RSNKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2755117467ATERF1
3gcc_A2e-2755117467ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g08380.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1015012e-99AK101501.1 Oryza sativa Japonica Group cDNA clone:J033044C14, full insert sequence.
GenBankAK2874532e-99AK287453.1 Oryza sativa Japonica Group cDNA, clone: J043018P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239814.10.0ethylene-responsive transcription factor ERF113
TrEMBLI1IX650.0I1IX65_BRADI; Uncharacterized protein
STRINGBRADI5G08380.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.15e-31related to AP2 6l