PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g08167.1.p

Common Name

BRADI_5g08167, LOC100827642

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

CAMTA

Protein Properties

Length: 1023aa MW: 113763 Da PI: 5.4912

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g08167.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	170.9	1.9e-53	11	127	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 lke ++rwlk++e++ iL n+e+ +t+e++++p+sgsl+Lynr++ r+frkDGy w++kkdg+tv E+he+LKvg+ ++l+cyYah++enp Bradi5g08167.1.p 11 LKEaRSRWLKPSEVYYILLNHERLPITHEPPNKPPSGSLFLYNRRVNRFFRKDGYAWRRKKDGRTVGEAHERLKVGNLDALSCYYAHGDENPC 103 56669************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylev 117 fqrrc+w+Le ++++ivlv+y+ev Bradi5g08167.1.p 104 FQRRCFWMLEPAYDHIVLVQYREV 127 ********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.333	7	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.1E-69	10	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.5E-46	13	126	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.29E-15	446	529	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:2.60.40.10	1.6E-8	447	538	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	2.7E-7	447	527	IPR002909	IPT domain
CDD	cd00102	1.25E-4	447	530	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.0E-16	641	736	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.08E-16	642	737	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.99	643	735	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.67E-10	648	735	No hit	No description
Pfam	PF12796	3.0E-6	659	736	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.4E-4	676	705	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.927	676	708	IPR002110	Ankyrin repeat
SMART	SM00248	3800	715	744	IPR002110	Ankyrin repeat
SMART	SM00015	24	796	818	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.218	797	826	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.48	855	884	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	6.9	856	876	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	4.51E-7	857	902	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00612	0.0027	857	875	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	3.4E-6	877	899	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.42	878	906	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.3E-5	879	899	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1023 aa Download sequence Send to blast
MSQSFDINVL LKEARSRWLK PSEVYYILLN HERLPITHEP PNKPPSGSLF LYNRRVNRFF 60 RKDGYAWRRK KDGRTVGEAH ERLKVGNLDA LSCYYAHGDE NPCFQRRCFW MLEPAYDHIV 120 LVQYREVAEG RNYSASVSNE SAGSLSALSY PNDIYGKQYH SSTSGSSESS ESRHSYSNSI 180 TEVSSGSANK MYNNHSGVLL SIPEFEQTTV IGAPELGQSS LEQSSEFCLT NKSGLKQALK 240 KIGEHLGLAD NDDDDYIYIN QSQPLDFDTS IEAADRQGHH TSNSLGNVSG EKQANQIQAG 300 ETQNGVSRGI LPSWGNVLQS NSVSSASSAY MQSSEYQPPG GLDSSDLQLQ LSAATRFLLG 360 PEDSIDSPSY NCIARDEGIN GIDTLSVHNS SLQSCLNPDW QSLTPITLES NACGSEIFEL 420 LSDHCQFEPS SGLDTRLTLT QKQQFNIHEI SPEWAFCSEV TKVIITGDFL CDPSNSCWGV 480 MFGDNEVPVE IVQPGVLRCH TPLHSSGKLT LCITNGNREV CSEVKDFEFR AKPTVSSFRD 540 LTQSSRSMKS SEELSLLAKF ARMLLCENGS SAVLDGDPQS TQRPKLNMNE EHWQQLIDEL 600 NVGCENPLSM VDWIMEELLK SKLQQWLSLK LQGNDGTCSL SKHEQGIIHL ISALGYEWAL 660 SSVLSAGVGI NLRDSNGWTA LHWAAYFGRE KMVAALLAAG ASAPAVTDPT AQDPVGKTAA 720 FLASKRGHMG LAGYLSEVSL TSYLLSLTIE ESDISKGSAA IEAERAVESI SQRSAQLHGG 780 TEDELSLKDS LAAVRNAAQA AARIQNAFRA FSFRKRQHKD ARLKDEYGMT QEDIDELAAA 840 SRLYYQHHVS NGQFSDKAAV SIQKKYRGWK GRKNFLNMRR NVVKIQAHVR GHQVRKKYKT 900 FVSTVSVLEK VILRWRRKGH GLRGFRAEQP AMIAAEEEEE EDDDDFDDDD DEAVKIFRRQ 960 KVDESVKEAV SRVLSMVESP EARMQYRRML EEFRQATIDT GASDEATSRL NDDLLMGMDF 1020 MF*

Sequence ? help Back to Top

Protein Sequence Length: 1023 aa Download sequence Send to blast

MSQSFDINVL LKEARSRWLK PSEVYYILLN HERLPITHEP PNKPPSGSLF LYNRRVNRFF  60
RKDGYAWRRK KDGRTVGEAH ERLKVGNLDA LSCYYAHGDE NPCFQRRCFW MLEPAYDHIV  120
LVQYREVAEG RNYSASVSNE SAGSLSALSY PNDIYGKQYH SSTSGSSESS ESRHSYSNSI  180
TEVSSGSANK MYNNHSGVLL SIPEFEQTTV IGAPELGQSS LEQSSEFCLT NKSGLKQALK  240
KIGEHLGLAD NDDDDYIYIN QSQPLDFDTS IEAADRQGHH TSNSLGNVSG EKQANQIQAG  300
ETQNGVSRGI LPSWGNVLQS NSVSSASSAY MQSSEYQPPG GLDSSDLQLQ LSAATRFLLG  360
PEDSIDSPSY NCIARDEGIN GIDTLSVHNS SLQSCLNPDW QSLTPITLES NACGSEIFEL  420
LSDHCQFEPS SGLDTRLTLT QKQQFNIHEI SPEWAFCSEV TKVIITGDFL CDPSNSCWGV  480
MFGDNEVPVE IVQPGVLRCH TPLHSSGKLT LCITNGNREV CSEVKDFEFR AKPTVSSFRD  540
LTQSSRSMKS SEELSLLAKF ARMLLCENGS SAVLDGDPQS TQRPKLNMNE EHWQQLIDEL  600
NVGCENPLSM VDWIMEELLK SKLQQWLSLK LQGNDGTCSL SKHEQGIIHL ISALGYEWAL  660
SSVLSAGVGI NLRDSNGWTA LHWAAYFGRE KMVAALLAAG ASAPAVTDPT AQDPVGKTAA  720
FLASKRGHMG LAGYLSEVSL TSYLLSLTIE ESDISKGSAA IEAERAVESI SQRSAQLHGG  780
TEDELSLKDS LAAVRNAAQA AARIQNAFRA FSFRKRQHKD ARLKDEYGMT QEDIDELAAA  840
SRLYYQHHVS NGQFSDKAAV SIQKKYRGWK GRKNFLNMRR NVVKIQAHVR GHQVRKKYKT  900
FVSTVSVLEK VILRWRRKGH GLRGFRAEQP AMIAAEEEEE EDDDDFDDDD DEAVKIFRRQ  960
KVDESVKEAV SRVLSMVESP EARMQYRRML EEFRQATIDT GASDEATSRL NDDLLMGMDF  1020
MF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g08167.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239810.1	0.0	calmodulin-binding transcription activator 4 isoform X3
Swissprot	Q9FYG2	1e-165	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	I1IX38	0.0	I1IX38_BRADI; Uncharacterized protein
STRING	BRADI5G08167.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-143	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Bradi5g08167.1.p
Entrez Gene	100827642

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]