PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g08062.1.p | ||||||||
Common Name | BRADI_5g08062, LOC100826411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24450.3 Da PI: 10.7443 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.5 | 6.5e-17 | 12 | 52 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 rie+ ++r + f kRr+g++KKAeEL vLC+a+v +i++ + Bradi5g08062.1.p 12 RIEDRRRRRICFRKRRAGLIKKAEELAVLCEADVGLIVVNP 52 8************************************9865 PP | |||||||
2 | K-box | 17.2 | 2.1e-07 | 122 | 167 | 42 | 87 |
K-box 42 dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 ++++L++ +L q+e+++e++l++ +++K + lle+ + ++ ++ Bradi5g08062.1.p 122 NISQLTMDQLSQIERKVEDALRSTKARKGKALLEERDLIKRISEKE 167 5899******************************998777654443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.423 | 3 | 55 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-18 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-20 | 5 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-15 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-19 | 12 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-15 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-15 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGRQRGRVVL RRIEDRRRRR ICFRKRRAGL IKKAEELAVL CEADVGLIVV NPFDRSFHCF 60 AAPATMENIM ARHQNFPAVK KRGHGRSILK HATKSRGKDF QLPRAITDRS LNIADMSIDE 120 SNISQLTMDQ LSQIERKVED ALRSTKARKG KALLEERDLI KRISEKEKKQ EGGMYGAGCQ 180 QSDEQVDVTL RLGFGIGYDI GCSHGHQKPI NLNMP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g08062.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469347 | 1e-103 | KF469347.1 Brachypodium distachyon MADS-box transcription factor 53 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014751692.1 | 1e-157 | MADS-box transcription factor 51 | ||||
TrEMBL | A0A0Q3E3P6 | 1e-156 | A0A0Q3E3P6_BRADI; Uncharacterized protein | ||||
STRING | MLOC_36644.7 | 3e-54 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16213 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 7e-12 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g08062.1.p |
Entrez Gene | 100826411 |