PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g07675.1.p | ||||||||
Common Name | BRADI_5g07675 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 169aa MW: 18627.9 Da PI: 6.6205 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.5e-05 | 52 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C +Cg +F++ ++H+ + H Bradi5g07675.1.p 52 FECDICGFTFRTVKAIRTHMLSsH 75 89******************9988 PP | |||||||
2 | zf-C2H2 | 17.6 | 1.1e-05 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cgk F+++ L H +H Bradi5g07675.1.p 89 YICGHCGKQFRSWRALGGHRASH 111 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.6E-5 | 52 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 52 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.3E-4 | 52 | 75 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.18E-8 | 52 | 111 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 54 | 75 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 87 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.655 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-7 | 89 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MAATRYVPRL TLSSSSSSGA DDGDEPPRYY PWRVKSAHEL DEGIIDPLHT SFECDICGFT 60 FRTVKAIRTH MLSSHPDADQ VVPPPIRWYI CGHCGKQFRS WRALGGHRAS HRGKKGCSLL 120 SKQERAEDFP AMVAAAAGAM RAPPAVVRDF DLNKPAPEEE QEEEDPPP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g07675.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0Q3KQH7 | 1e-121 | A0A0Q3KQH7_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37257 | 2 | 3 | Representative plant | OGRP11373 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 2e-07 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g07675.1.p |