PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g05110.1.p | ||||||||
Common Name | BRADI_5g05110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 284aa MW: 30808.2 Da PI: 5.08 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6e-13 | 77 | 121 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+++N+++ Lr+++P+ +K++Ka+i + A+eYI++Lq Bradi5g05110.1.p 77 ILMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQKLQ 121 579*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.999 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.29E-14 | 75 | 125 | No hit | No description |
SuperFamily | SSF47459 | 6.94E-17 | 75 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 76 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-15 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-16 | 77 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MESDMGDSFA YYWETQRYLE SEELVDSILA GATEDAMSYY DSSSPDGSHS SSAPAGAATM 60 APGAGTATGT GGANKNILME RDRRRKLNEK LYALRSVVPN ITKMDKASII KDAIEYIQKL 120 QAEERRMAAE VESEEYGGGG GVMEEQVCSA KKVKRALSVS SLNDALFTAP SPSPPVEVLE 180 VRVSEVGEKV LVVSVTCSKQ RDAMPKVCRL LEELRLRVIT ANITSVSGCL MHTLFIEVHQ 240 FTVAATIPLS VRLLCFPFFD VKMTWGALTS RTRLNSLVGV DSC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g05110.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579501.1 | 1e-174 | transcription factor bHLH35 | ||||
TrEMBL | A0A0Q3H1U4 | 0.0 | A0A0Q3H1U4_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G05110.2 | 1e-173 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 | Representative plant | OGRP2753 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.2 | 4e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g05110.1.p |