PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g01973.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 756aa    MW: 86693.3 Da    PI: 8.8669
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g01973.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.83.1e-22115214190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                       +fY++YA++v Fsvr+ ++++   ++ +++r+f C k+g+r++++++            ++k+ + r+ tr+gC+a+++vk++kdgk+ v+ +
  Bradi5g01973.1.p 115 EFYKAYAHNVEFSVRIGQKRTV--DNVVVWRRFLCGKSGFRRNNEEEpkkelngekkgdEKKRTHARKITRCGCEAMITVKRMKDGKYAVSYF 205
                       6****************99888..889****************999999*******9977788889*************************** PP

              FAR1  82 eleHnHela 90 
                       ++eH+He++
  Bradi5g01973.1.p 206 HEEHTHEFV 214
                       *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-19115214IPR004330FAR1 DNA binding domain
PfamPF105511.1E-29336428IPR018289MULE transposase domain
PROSITE profilePS5096610.608617653IPR007527Zinc finger, SWIM-type
PfamPF044343.6E-4628649IPR007527Zinc finger, SWIM-type
SMARTSM005753.4E-5628655IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MENPAAGPQP PLAAHPGRAA AAACPRPSPP SAPTVSHRPP LDSVVNHRPP PTMNLPDEHA  60
PLRPVVISGL AAPQSPTTHP PPRSPAQASS CTPECDENLK PAVGMAFDNM EEVEEFYKAY  120
AHNVEFSVRI GQKRTVDNVV VWRRFLCGKS GFRRNNEEEP KKELNGEKKG DEKKRTHARK  180
ITRCGCEAMI TVKRMKDGKY AVSYFHEEHT HEFVTPRKQH LIKSNRQVSD KAKDTLFTCH  240
AASIGTAGAF RLLRVGEGGF EFVGCTKRDL QNYHRDMRST FKDSDAQMFI DNLRKRQEIK  300
PGFFFEYVLD DKNRLTHVFW ADACCRKNYA LFGEMVSFDS TYSTNQYSMI FCPFTGINHH  360
MASVFYGAAL IVNETIESYK WVFQTFLKAM DGAAPRLIVT DEDQSMKIAI EDVMHNTVHR  420
LCMWHIMRKL PEKVGPPLRE DEHFYSPINS CVWGSENPTE FEAKWSSMIS EFGLEDNTWF  480
SRRYELRESW IPAYFRAVFL GEILRTTSRS ESANSFFNHF IGYKHALVEF WIRIGTALEE  540
QCQNELKADH ECLNSMPPLI TSWEIEKHAS LFFTHAVFSS FQKEVRASRD HCLIENISQE  600
GDVRTTIIGG ARSFKSREVQ FNTTSKSAHC SCMLFETRGI PCRHIIMVLR GAKMSELPSH  660
FILDRWKKTV NRRVVYDSSG NLLEENERLP PIVLVDKMSS RHILVVLCLI KLKFIHQLMS  720
AQRGDAKELR DTYTRVGIKI RMGKQRKLRM ERRIKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172176KKRTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g01973.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314063.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2CEY80.0A0A2K2CEY8_BRADI; Uncharacterized protein (Fragment)
STRINGTRIUR3_33462-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-118FAR1-related sequence 5