PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g01920.2.p | ||||||||
Common Name | BRADI_5g01920, LOC100829559 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | E2F/DP | ||||||||
Protein Properties | Length: 473aa MW: 51821.8 Da PI: 6.3395 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 80.9 | 1.1e-25 | 189 | 254 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++ll+ +e+g+++ln++a++L +v ++RRiYDi+NVLe+++liek kn irwkg Bradi5g01920.2.p 189 RYDNSLGLLTKKFINLLRGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKGLKNMIRWKG 254 689*******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.7E-27 | 186 | 255 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.3E-16 | 189 | 252 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.1E-32 | 189 | 254 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 4.1E-23 | 191 | 254 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 1.06E-31 | 265 | 378 | No hit | No description |
SuperFamily | SSF144074 | 9.94E-21 | 267 | 377 | No hit | No description |
Pfam | PF16421 | 8.8E-23 | 270 | 375 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MDGSSSLPLP RPSPTPQSPL PPQIFLRCPA PPPPGAAPAP AHVHFFRAPS PIPMYSPRIP 60 GPRYIAARPP TPSPPAAPAA MAPPRPPPLA QASAPAHPPS SEAATAPFPP PKPAAKGRPP 120 KPKAPDNEQK LERENAQSEV GKVETEQGHH KEGTTGPIKG IKRPKKQKGS SHGATEGDAG 180 PLFSPNNCRY DNSLGLLTKK FINLLRGAED GTLDLNKAAE TLEVQKRRIY DITNVLEGVD 240 LIEKGLKNMI RWKGFDMIMP KEMERRTSEL KEEIESSYDE DYRLDEEILK VQAKLEALKV 300 NKDTRKWLYL SREDIIKIPR FQGSTLIAIK APRGTCVEVR DPNADMDIFK DLESQEKQYR 360 ILLRSSMGPI DCYLISDHQE ISNPDQVAPD NLDPAVTTGS SQTPQQVDYH PSQAPEIGES 420 NIVGKQASEP SRMQELMSGI LRIVPADADI DADYWLASEV DATMTDTWAR AT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 1e-21 | 189 | 255 | 7 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g01920.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239658.1 | 0.0 | transcription factor E2FC | ||||
TrEMBL | A0A0Q3NYW2 | 0.0 | A0A0Q3NYW2_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G01920.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 | Representative plant | OGRP14780 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 8e-76 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g01920.2.p |
Entrez Gene | 100829559 |