PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g01872.1.p
Common NameBRADI_5g01872, LOC100828959
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 487aa    MW: 50233.4 Da    PI: 10.2149
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g01872.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05224246223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C+ Cg++F+  ++L++H+   H
  Bradi5g01872.1.p 224 PCSQCGEVFTKAESLEHHLAIrH 246
                       799***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.182223251IPR007087Zinc finger, C2H2
PROSITE patternPS000280223246IPR007087Zinc finger, C2H2
SuperFamilySSF563992.68E-12248340No hitNo description
Gene3DG3DSA:3.90.228.101.6E-5250339IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.101.6E-5378481IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563992.68E-12378480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MALSTLLLPT AASAADTSDR RRQHHGKRKK KPPPSPSPRT TPPPAARTST SGSRHRAAAS  60
PSKIKSPAAA MDASSKLGAA GKSHQRHHSK PSKKAAASSS SSSSSSSWEQ LKSLLSCRSA  120
TAAARVHDPA ASSSSARLRA GGACGASLCS IRDVLIDGGA SASSVASSAA PLNRSSRRTH  180
RSVTPSSTGG HPSSLRGLSG CYECRAINVE PVSRRYPRPR ELCPCSQCGE VFTKAESLEH  240
HLAIRHAVSE LGPEDSGRNI VEIIFKSSWR QQRQSPVGMG AAMCQIERIL KVHNPARTVA  300
RFESYRDAVR ARCRAATAAT TRAAADGNEL LRFHPARLSC ALGLAGSSSL CSSTTAADDT  360
DPQSASATPS GNGECCGVCA AIRHGFAPWA GEHALGVRTT ASSGRAHQGA GAAGDGAGSA  420
RAMLVCRVIA GQVRKAGGEE EGLFDSVAGE EDGGGAYGSM EELFVANPRA ILPCFVVIYR  480
VAAPSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g01872.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856071e-74BT085607.2 Zea mays full-length cDNA clone ZM_BFc0038L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014750892.10.0uncharacterized protein LOC100828959
TrEMBLA0A0Q3E5Z30.0A0A0Q3E5Z3_BRADI; Uncharacterized protein
STRINGONIVA12G09670.11e-155(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-57C2H2-like zinc finger protein