PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g01250.3.p
Common NameBRADI_5g01250, LOC100844039
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 440aa    MW: 48222.4 Da    PI: 5.0213
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g01250.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57333.11.6e-10248333286
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 
                       +++r w  +Dei++L  ++ +++++g  p  + ++f+++v k+++ +  + + + +K+ +L++++ +k++k+ +++ +++++ ++q
  Bradi5g01250.3.p 248 RIRREWAPNDEILILEQVVHYRDTHGYPPEVEDSGFFQYVLKQLEDQsLELRTVKDKMSSLRRRYFEKKHKSTTEHGKRLDNLSEQ 333
                       57899**********************9999999999999999986615668899**************99666666555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.0E-10250333IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAGKRAAKRG RKTGIPAGSD CSVELGLNGV PMEPQVTENP PPEHQVTDNP PPEQEKIAMA  60
GKRAAKRGRK TGIPAGSEGS VELGLNGVPV EPQATEKPPP EPAAEVEGGE AEEGEGSQQS  120
EEAEREEEQS DLHSSSKEGS QSEDEEEGGE SMEEEAADEL ASALQLLSKG RTRGSSRVNS  180
PEDHQEHGPE DEGAGIIKGK NKKMRKPAPE EHEPEEQGAE VIKSKKRKLE RIKPAQQQGE  240
PGTSKVKRIR REWAPNDEIL ILEQVVHYRD THGYPPEVED SGFFQYVLKQ LEDQSLELRT  300
VKDKMSSLRR RYFEKKHKST TEHGKRLDNL SEQAWGKPSQ VGAKDSSGRN LSKKALRRNS  360
RKDSNGSKTG DKSFEEMCEM YPLLAQEVEL IADIDPSAKS SFTRIDAEVA CQLEKQLDAA  420
KAQVSQVRQT LAGELAEAC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g01250.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580956.10.0ABC transporter F family member 4
TrEMBLI1IVN00.0I1IVN0_BRADI; Uncharacterized protein
STRINGBRADI5G01250.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-07DNA-binding storekeeper protein-related transcriptional regulator