PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g00676.1.p
Common NameBRADI_5g00676
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 157aa    MW: 17136.2 Da    PI: 9.212
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g00676.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.1e-065173123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C++C++ F++   L  H+++H
  Bradi5g00676.1.p 51 YTCGYCKREFRSAQALGGHMNVH 73
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-64878No hitNo description
PROSITE profilePS5015711.5315178IPR007087Zinc finger, C2H2
PfamPF139124.2E-75175IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MESRSTARSR SGEHNRHGGG GQQQQLRPAW SYGVSFTGGV PWPPALQRSS YTCGYCKREF  60
RSAQALGGHM NVHRRERARL RHYYCSNYPA AMAMHRQANP PPLPQHFTVV YSFFSAAEAA  120
ATTTTKDALM EVDLELGVGG FGSDGGLDLE LRLGCS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator considered as cadastral protein that acts indirectly to prevent the B class homeotic proteins APETALA3 and perhaps PISTILLATA from acting in the gynoecial whorl. Principal function is to balance cell proliferation in the third and fourth whorls of developing flowers thereby maintaining the boundary between stamens and carpels. May fulfill this role by repressing genes implicated in cell division. Plays equally a role in the determinacy of the floral meristem. Is also required for normal ovule development. {ECO:0000269|PubMed:11006335, ECO:0000269|PubMed:11943180, ECO:0000269|PubMed:12324589, ECO:0000269|PubMed:1352237, ECO:0000269|PubMed:7477325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g00676.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by KRYPTONITE/SUVH4, member of the histone H3-K9 methyltransferase family that contributes with other factors to the CpNpG methylation of the SUP gene resulting in its silencing. The alternative epigenetic states of the SUPERMAN locus have been called Clark Kent alleles. Positively regulated at an early stage of development by LEAFY and by B class homeotic proteins APETALA3 and PISTILLATA. Later expression is maintained by both the B class homeotic proteins and the C class homeotic protein AGAMOUS. These two steps of regulation require the intervention of additional factors. {ECO:0000269|PubMed:11898023}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240689.17e-83transcriptional regulator SUPERMAN
SwissprotQ388959e-17SUP_ARATH; Transcriptional regulator SUPERMAN
TrEMBLA0A0Q3I5Q71e-112A0A0Q3I5Q7_BRADI; Uncharacterized protein
STRINGPavir.J31403.1.p2e-32(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.18e-18C2H2 family protein
Publications ? help Back to Top
  1. Breuil-Broyer S, et al.
    Analysis of the Arabidopsis superman allelic series and the interactions with other genes demonstrate developmental robustness and joint specification of male-female boundary, flower meristem termination and carpel compartmentalization.
    Ann. Bot., 2016. 117(5): p. 905-23
    [PMID:27098089]
  2. Prunet N,Yang W,Das P,Meyerowitz EM,Jack TP
    SUPERMAN prevents class B gene expression and promotes stem cell termination in the fourth whorl of Arabidopsis thaliana flowers.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(27): p. 7166-7171
    [PMID:28634297]
  3. Uemura A, et al.
    Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis.
    Plant Reprod, 2018. 31(1): p. 89-105
    [PMID:29218596]
  4. Xu Y, et al.
    SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis.
    EMBO J., 2019.
    [PMID:29764982]