PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g00530.2.p | ||||||||
Common Name | BRADI_5g00530, LOC100830898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 303aa MW: 31564.8 Da PI: 7.1678 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Bradi5g00530.2.p 108 YECKTCSKRFPSFQALGGHRTSH 130 99*********999998888777 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00067 | 205 | 227 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Bradi5g00530.2.p 205 HECSICGAEFASGQALGGHMRRH 227 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.09E-8 | 107 | 130 | No hit | No description |
Pfam | PF13912 | 8.7E-13 | 107 | 132 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.1 | 108 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.284 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.09E-8 | 200 | 227 | No hit | No description |
Pfam | PF13912 | 1.3E-12 | 204 | 228 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 205 | 227 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 205 | 232 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEAAAGGVVV AKGKRSKRQR VHAAAALTPA AAESSSSLSS VVVFASGGEE EEAASGCVTE 60 EEEDMAMCLM LLARGGHGGS TSAAAAMAKE GKKFRSRRRE EGSGELVYEC KTCSKRFPSF 120 QALGGHRTSH KKPRLPTPKA DSEDQKAPSM SPPPPPSPTD PTATALLGIP APGTPPPPPA 180 INPNPKQQRR ERDMAMAIGG SSRVHECSIC GAEFASGQAL GGHMRRHRPL VPAAAASEEE 240 TTTTTTKEKS LLELDLNMPP APCPCDDADV DTTKPAAFVF NVKELLFPAP APASAMVVDC 300 HY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g00530.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014751110.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | I1IVF0 | 0.0 | I1IVF0_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G00530.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 | Representative plant | OGRP2350 | 10 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 3e-24 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g00530.2.p |
Entrez Gene | 100830898 |