PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g44000.1.p | ||||||||
Common Name | BRADI_4g44000, LOC100831889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 401aa MW: 43648.2 Da PI: 6.3903 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.2 | 1.6e-49 | 15 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtd el+++yL+++ +++++++ +i+ev+iy+++Pw+Lp k + a++ ew+fFs+rd+ky++g r+nra+ +gyWkatg+dk+ Bradi4g44000.1.p 15 LPPGFRFHPTDAELITHYLANQSSSSPIPA-PIIAEVNIYRSNPWELPaKaLFGARDGEWFFFSPRDRKYPNGARPNRAAGDGYWKATGTDKP 106 79****************************.88***************5334555777*********************************** PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ ++ vg+kk Lvfy+g+ p+g+ktdW+mheyrl Bradi4g44000.1.p 107 IVASdsASAIVGVKKALVFYRGKPPRGVKTDWIMHEYRL 145 **98656667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-60 | 9 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.081 | 15 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-25 | 16 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MAPPPPTTAA AMPALPPGFR FHPTDAELIT HYLANQSSSS PIPAPIIAEV NIYRSNPWEL 60 PAKALFGARD GEWFFFSPRD RKYPNGARPN RAAGDGYWKA TGTDKPIVAS DSASAIVGVK 120 KALVFYRGKP PRGVKTDWIM HEYRLASSSA NGACKRRSSA GSASSMRLDD WVLCRIHKKN 180 SNGSTNLHNF SSSSEHEHEQ EESSTVEESS MNNTNMKNNA VASPKSEAFD GGNDEELQEL 240 RPMAIAKSCS ITDLLNTVDY ASLSHLLLDG AADTAAYHDQ LPAPEESPLI YTPPNPWQTL 300 NNCSNNNNSS SLSYLNDDAI AVPQLAEQHD QYYYSSNGDQ YVNGGTVKRK RSSGGGYCNQ 360 LQHQVSDDHL LAGNSSSSGG FQYSGMLMHP FLMNSHQLQM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-69 | 15 | 182 | 15 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321). {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g44000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577115.1 | 0.0 | NAC domain-containing protein 67 | ||||
Swissprot | A0SPJ3 | 1e-77 | NAMA1_TRITD; NAC transcription factor NAM-A1 | ||||
TrEMBL | I1IUV9 | 0.0 | I1IUV9_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G44000.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3803 | 37 | 75 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 3e-66 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g44000.1.p |
Entrez Gene | 100831889 |
Publications ? help Back to Top | |||
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