PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g43850.3.p

Common Name

BRADI_4g43850, LOC100846555

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 315aa MW: 34663.9 Da PI: 6.272

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g43850.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.2	9.6e-15	242	287	4	49
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++r++r++kNRe+A rsR+RK+a++ eLe k Le+eNk+Lk e Bradi4g43850.3.p 242 DRRQKRMIKNRESAARSRARKQAYTNELECKLSCLEEENKRLKREK 287 68****************************************9542 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-8	239	295	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.852	241	286	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-12	243	290	No hit	No description
SuperFamily	SSF57959	2.25E-10	243	288	No hit	No description
CDD	cd14707	1.54E-20	243	290	No hit	No description
Pfam	PF00170	6.3E-12	243	287	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	246	261	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MSSQGGSTAV MGKGHHRAHI QTLVREGSLY NLTLSEVESH LGAPLLSMNL DDLVRSVLPD 60 DTSLPIRNGV GNSGSQNTPS SGLERQGSSI TVPPALSKKT VDEVWRDIQQ DQESSDDEER 120 SSGCEAQLSF GEMTLEEFLH RVGIVSEQHQ KDADELSGRV GTGEDSNLMT KVQDFPQGTS 180 PIDAFIIRQS IAQPLSVAIP STMDAIYPDG QMSISPSVAL SDLQTPTRKR ISSEDVVYKV 240 VDRRQKRMIK NRESAARSRA RKQAYTNELE CKLSCLEEEN KRLKREKELD RLLKSAPPPP 300 EPKPLLRRAR SASF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g43850.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003578996.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_010238783.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	I1IUU3	0.0	I1IUU3_BRADI; Uncharacterized protein
STRING	BRADI4G43850.3	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18598	7	9
Representative plant	OGRP540	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	9e-44	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Bradi4g43850.3.p
Entrez Gene	100846555