PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g43220.1.p
Common NameBRADI_4g43220, LOC100833635
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 742aa    MW: 81760.1 Da    PI: 6.8124
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g43220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.22.6e-13195273190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn Y+ e+GF +r  +s+ +  +g+  +++ +C + gk++++ k+           r++C+a +++ +++d+ w++t+ ++ HnH ++
  Bradi4g43220.1.p 195 EFYNIYSWETGFGIRYGRSRVN-SKGSKCMQEITCCQGGKPAKDGKS----------RRCDCTALIRLLRTDDNGWYITQHRKVHNHGFS 273
                       6*****************9998.5666888999********999887..........9*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-9195273IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MELTSAEEEP RLGTPMGLGL GGDTMEAVRR AFPGQHFALH VVNRAFGRPD PAERSRQDSS  60
ACVVNGARAS ENPVDLEKAA ENPGKSSAQQ GSSTGGIGEP APSEKRVGSG EIEHAGQHHG  120
APPAPAGIGD DAGASGTGGW RRRIRRGRIP DEREPDADRV SALEKALTGF AVRQTDVIVS  180
PAVGTCFDSL AEAYEFYNIY SWETGFGIRY GRSRVNSKGS KCMQEITCCQ GGKPAKDGKS  240
RRCDCTALIR LLRTDDNGWY ITQHRKVHNH GFSTAYYNKL QWPSHKHIDK YTRDLVRQLA  300
GNNVNLGVYD TIASFFGRRT ENVPFTKRSI RTLCGEVIRE QAADDDARKT METAPVLGEK  360
DPENHTQEET PVNHRGSTST NTDSVNVPAD PLRYPDQGDT QINTEAGRLA DLMLAFGDCH  420
LVLKNCTYDD LMNSNGTMSG LEEAVKAVTP HLQQGIFGDL WSRAHNSGGI VSAQVLTIRD  480
LFRFTRWLTT TTGQHNLRCV EQHVKLVKSG NGVFEPEQMA LLQLYQAEND EHSREMRRLQ  540
GERDEKIAHY MAKIDEARKT FEVNVEAAKV RYPVSSSYCP LDTNELRGQC WTVYLAHCRK  600
EAKDLNARAS NIVEKYGPEL LQRHLYEFCS QETNREALLK YGQTKVKKLK EAGVAQGENT  660
LHGYMALLDI EKACALLAAE EQIANDPDTC GGGDEERRTN RSNGVARDVA AGGAAQENGS  720
EDAPERPPLQ KRLRSGQSYA R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g43220.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578953.10.0uncharacterized protein LOC100833635
TrEMBLA0A0Q3EYB70.0A0A0Q3EYB7_BRADI; Uncharacterized protein
STRINGBRADI4G43220.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.16e-11FAR1-related sequence 12