PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g43200.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 569aa    MW: 60661.3 Da    PI: 7.3346
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g43200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.77e-102835522374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevs 88 
                       + lL++cA  v++g l +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++ v++l++al +s++s+++     +s+  aa++  +++ 
  Bradi4g43200.2.p  83 IGLLYQCAAEVAAGALDRANLCLEHIMQLASLDApHALQRLAAVFADALARKLLNLVPGLSRALLTSSSSSSSpspagTSSGDAARRHMFDML 175
                       679*******************************9*****************************888888777788876666778888***** PP

              GRAS  89 PilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                       P+lk+++lt+N+aIlea+ege+ vH++D++  + +++QW+aL++a+  R+    +  p+lR+T+v++    ske l +++  La+ Ae++++p
  Bradi4g43200.2.p 176 PFLKLAYLTTNHAILEAMEGERFVHVVDLSgpAANPAQWIALFHAFRGRSrdgqGVFPHLRVTAVHE----SKEFLGAMAASLAREAEAFDIP 264
                       *****************************866899************88865544489*********....9********************* PP

              GRAS 176 fefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll.................................................. 214
                       f+f   v++rledl+  +L    rv++gEalaV+++lqlhrll                                                  
  Bradi4g43200.2.p 265 FQFAG-VESRLEDLDSAALrhclRVRSGEALAVSVALQLHRLLaadddgrcrrhpgggltplqsilaarssprspssggsssfgellerelnt 356
                       *****.799*****9988866668999****************************************************************** PP

              GRAS 215 ........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........l 275
                                               ++s+s + + +++L+++k lsPkv+v++eqea+hn++ F erf eal+yy++lfd+le           
  Bradi4g43200.2.p 357 rlqlspdassynspqyssptmsafSSSGSGKPKLESFLSAIKALSPKVMVITEQEANHNGAAFHERFDEALNYYASLFDCLERAssgqgqhrS 449
                       ***********************9888888889999*********************************************766566665433 PP

              GRAS 276 pres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveee..sgslvlg 361
                          +   e +++vEr++lg+ei+++va eg+er+erhe++++W  r+e++G++ v ls+  a++a+ ll+ ++  + gy+v ++  ++ ++++
  Bradi4g43200.2.p 450 ---NsaaERARVVERAVLGEEIRSIVASEGRERKERHERAAQWAGRMEASGMERVGLSYGGAMEARKLLQSCGlgGGGYQVRHDvqEQRFFFC 539
                       ...145588899*************************************************************85566***9765588899** PP

              GRAS 362 WkdrpLvsvSaWr 374
                       W+drpL++vSaWr
  Bradi4g43200.2.p 540 WHDRPLYAVSAWR 552
                       ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.46956528IPR005202Transcription factor GRAS
PfamPF035142.4E-9983552IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MKTSGREEIK EAASTHLLGL VGWLIFGKED RDSNVPATAA AAAAGGRDVV VGDIVSGVDA  60
VLAVSAGGGG VELSSDQCSV RLIGLLYQCA AEVAAGALDR ANLCLEHIMQ LASLDAPHAL  120
QRLAAVFADA LARKLLNLVP GLSRALLTSS SSSSSPSPAG TSSGDAARRH MFDMLPFLKL  180
AYLTTNHAIL EAMEGERFVH VVDLSGPAAN PAQWIALFHA FRGRSRDGQG VFPHLRVTAV  240
HESKEFLGAM AASLAREAEA FDIPFQFAGV ESRLEDLDSA ALRHCLRVRS GEALAVSVAL  300
QLHRLLAADD DGRCRRHPGG GLTPLQSILA ARSSPRSPSS GGSSSFGELL ERELNTRLQL  360
SPDASSYNSP QYSSPTMSAF SSSGSGKPKL ESFLSAIKAL SPKVMVITEQ EANHNGAAFH  420
ERFDEALNYY ASLFDCLERA SSGQGQHRSN SAAERARVVE RAVLGEEIRS IVASEGRERK  480
ERHERAAQWA GRMEASGMER VGLSYGGAME ARKLLQSCGL GGGGYQVRHD VQEQRFFFCW  540
HDRPLYAVSA WRPAGAGPAS AYHHRGPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-188855325380Protein SCARECROW
5b3h_A2e-188855324379Protein SCARECROW
5b3h_D2e-188855324379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g43200.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577073.10.0scarecrow-like protein 3
TrEMBLA0A2K2CTY20.0A0A2K2CTY2_BRADI; Uncharacterized protein
STRINGBRADI4G43200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-95scarecrow-like 3