PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g42167.1.p

Common Name

BRADI_4g42167, LOC100841176

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 274aa MW: 30479 Da PI: 7.7452

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g42167.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	92.8	2.5e-29	36	141	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ltpsdv+k++rlv+pk++ae++ +++ e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F +++ Bradi4g42167.1.p 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplnggDSPGEKDLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAGDVVHFDRVRG 128 99**************************87445557778999*******************************************8865 PP ..SEE..EEEEE- CS B3 88 ..sefelvvkvfr 98 ++ +l+++ +r Bradi4g42167.1.p 129 lgTGDRLFIGCRR 141 5455555665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.5E-39	30	146	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-28	33	129	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.55E-27	34	128	No hit	No description
Pfam	PF02362	1.2E-26	36	142	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.197	36	142	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-22	36	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MAMHPLSQGH PQAWPWGVAM YTNLHYHQQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLNGGDSP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKHLDAGDV 120 VHFDRVRGLG TGDRLFIGCR RRGETAPAAV ATPPPVRVLP PALNAGEQKP WSPMCYSTSG 180 SYPTSPANSY AYRHSVEQDH SDMLHAGESQ RDADAKSSST ASAPPSRRLR LFGVNLDCGP 240 EPEAEAPTTP MYGYTNHSPY AAVATVPNYW GSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	5e-49	31	142	3	113	B3 domain-containing transcription factor NGA1
5os9_B	5e-49	31	142	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g42167.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003578891.1	0.0	B3 domain-containing protein Os11g0156000
Swissprot	Q53QI0	1e-129	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	I1IU87	0.0	I1IU87_BRADI; Uncharacterized protein
STRING	BRADI4G42167.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89
Representative plant	OGRP365	16	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	1e-54	B3 family protein

Link Out ? help Back to Top
Phytozome	Bradi4g42167.1.p
Entrez Gene	100841176

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]