PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g41616.1.p
Common NameBRADI_4g41616, LOC104584778
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 354aa    MW: 36621.4 Da    PI: 6.0492
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g41616.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-19173222255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+ ae Aa+a++aa++ ++g
  Bradi4g41616.1.p 173 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDDAEAAARAYDAAALGFRG 222
                       8********.**********7.....337**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.08E-18172232No hitNo description
PfamPF008479.8E-12173222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-32173232IPR001471AP2/ERF domain
PROSITE profilePS5103224.987173230IPR001471AP2/ERF domain
SMARTSM003801.7E-35173236IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-22173232IPR016177DNA-binding domain
PRINTSPR003677.4E-11174185IPR001471AP2/ERF domain
PRINTSPR003677.4E-11196212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MCSGAAEVAD PGGDQHRRRR LAGAGVGEDN RGQPTPPGAA LTTSISSTAM MWRRRQAHEM  60
SAMVSALANV VAGGEGPAAA SSSTSVKRPA AEQLVDDADE AWWSPVPAAY GGQLPGGAPG  120
TATPPTFLAD YAAAATTPTA QQQYQPSSSA AAAAAIAGDE ELPSPSSGGP RKRYRGVRQR  180
PWGKWAAEIR DPHKAARVWL GTFDDAEAAA RAYDAAALGF RGSRAKLNFP ESASLLLPPQ  240
QPNQPPPPVA MPPPQRPEAL LESHAMWGDQ SYSQYARFLQ GGAGGDQSAS GTAAAPPLLY  300
SFGAGASYAL QPEMSRPGYP AAASPSSAEA WAATYGLHDD PRRRRDDDEP PSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-21172230463ATERF1
3gcc_A7e-21172230463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g41616.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620613e-71AK362061.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238677.20.0ethylene-responsive transcription factor ABR1
TrEMBLA0A0Q3EXB70.0A0A0Q3EXB7_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-23related to AP2 6