PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g41277.1.p | ||||||||
Common Name | BRADI_4g41277, LOC100829145 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 29068.6 Da PI: 8.4918 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +k +G g+W++ ++ g+ R++k+c++rw +yl Bradi4g41277.1.p 14 KGAWTKEEDQRLIAHIKDHGDGCWRSLPKAAGLQRCGKSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.5e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T+eEd ++++++ G++ W++Ia +++ gRt++++k++w+++ Bradi4g41277.1.p 67 RGHFTEEEDNVIIRLHEAIGNK-WSLIAGKLP-GRTDNEIKNYWNTH 111 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.942 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.48E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.96E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.451 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.53E-12 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIAHIK DHGDGCWRSL PKAAGLQRCG KSCRLRWINY 60 LRPDLKRGHF TEEEDNVIIR LHEAIGNKWS LIAGKLPGRT DNEIKNYWNT HVKRKLIAQG 120 IDPLTHLPLN AANPGPPGAA HRRRAFPAPL AGGGSASCSR SRDAAGSSED DDSGSLGNLD 180 LDLNLSISPP CVHYPASSSS SPSPPPPARI AAAMDYDPSL GYYASSGVCV CLDRLGFQGN 240 GEPCSFCNGG ASSSSSSSMR PVASSSGVFR FA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-30 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g41277.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069656 | 1e-125 | BT069656.1 Zea mays full-length cDNA clone ZM_BFb0205E08 mRNA, complete cds. | |||
GenBank | KJ726802 | 1e-125 | KJ726802.1 Zea mays clone pUT3029 MYB transcription factor (MYB67) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578854.1 | 0.0 | transcription factor MYB8 | ||||
Swissprot | P81393 | 1e-81 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | I1ITY5 | 0.0 | I1ITY5_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G41277.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-77 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g41277.1.p |
Entrez Gene | 100829145 |
Publications ? help Back to Top | |||
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