PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g40948.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 157aa MW: 17866.9 Da PI: 10.0489 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.7 | 2.4e-26 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien r vtf+kRr+g+lKKA ELSvLCdaev viifss+gkl+e + Bradi4g40948.2.p 10 RIENPAHRRVTFCKRREGLLKKARELSVLCDAEVGVIIFSSQGKLHELA 58 8*********************************************965 PP | |||||||
2 | K-box | 33.2 | 2.2e-12 | 79 | 145 | 20 | 86 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 e+ +++ei Lq+ +R G + ++++l L++Le+ Le+ + + Rs+K++++ ++i+ l +k + Bradi4g40948.2.p 79 EILLVREEIGHLQHGLRSTYGGGAGDMTLDKLHKLEKGLEQWICHMRSTKMQIMQQEIQLLENKLLD 145 78889******************************************************99988655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.847 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-27 | 1 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.18E-35 | 3 | 73 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-23 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.827 | 73 | 156 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.0E-12 | 79 | 145 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MVRGKVRMRR IENPAHRRVT FCKRREGLLK KARELSVLCD AEVGVIIFSS QGKLHELATN 60 GNMQSLIGRY QSDVVAEPEI LLVREEIGHL QHGLRSTYGG GAGDMTLDKL HKLEKGLEQW 120 ICHMRSTKMQ IMQQEIQLLE NKLLDLAYQT LFGRVK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g40948.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469328 | 1e-120 | KF469328.1 Brachypodium distachyon MADS-box transcription factor 34 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001289799.1 | 2e-93 | MADS-box transcription factor 33 | ||||
Swissprot | Q2QW55 | 1e-74 | MAD33_ORYSJ; MADS-box transcription factor 33 | ||||
TrEMBL | A0A2K2CTJ9 | 1e-110 | A0A2K2CTJ9_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G40357.1 | 6e-93 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 8e-47 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g40948.2.p |