PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g40880.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 392aa    MW: 42203.9 Da    PI: 6.4049
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g40880.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.42.5e-14141495128
               NAM   5 frFhPtdeelvveyLkkkvegkk.......leleevikevdiykvePwdLpk....kvkaeek.ewyfFskrdkkya.tgkrknr.atksgyW 83 
                       +rF+P+  e v++yL + + g++         +++ i+++d+y   P dL +    + ka+ + + +f ++ ++    +g+++ r ++ +g+W
  Bradi4g40880.2.p  14 CRFDPEPAEAVTYYLPRLLPGSPppppplpRGIDRLIHRADVYARSPADLAAsfppAPKAGFTgDRFFLTPCRRIPGrRGNKSARvVAGEGTW 106
                       69********************99998876555557**************854566333444435566666666544368899997788**** PP

               NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + k++e+l+  +g++vg  + L f +++ +    + Wvm+eyr 
  Bradi4g40880.2.p 107 VIQ-KTREILDGaGGAKVGEVRNLSFSSKKGEA--TSGWVMEEYRC 149
                       976.5688887669999*********9544444..789******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.09110169IPR003441NAC domain
PfamPF023655.1E-1014148IPR003441NAC domain
SuperFamilySSF1019412.88E-1814168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
METGEEMKEV FYLCRFDPEP AEAVTYYLPR LLPGSPPPPP PLPRGIDRLI HRADVYARSP  60
ADLAASFPPA PKAGFTGDRF FLTPCRRIPG RRGNKSARVV AGEGTWVIQK TREILDGAGG  120
AKVGEVRNLS FSSKKGEATS GWVMEEYRCL LPQAAFDDGE MVLCKIHLSR NASAAARQES  180
AAYLLHRQSQ ERAEPVSAHA APNTKRAAPV AADLPVPSPK KTRLAAPLPV PVPAGASRFT  240
CSPEELLGGG LAAQETPPVE AGKRVDEYAA SLEGFLGRPE EVETAPLAGG DEPKQWLAAS  300
GSDEVSSSSM AAEDGGELLG RLSTDADRNS CQRACKNIHS FIHCQFDYSL SEFMPSFLQV  360
HVQLTRITMS IVVFWTSGLN LAFCQMYSSS T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g40880.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233490.12e-68uncharacterized protein LOC104583318
TrEMBLA0A0Q3HUE60.0A0A0Q3HUE6_BRADI; Uncharacterized protein
STRINGBRADI4G40880.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Representative plantOGRP9262314