PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g40333.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 141aa MW: 16000.4 Da PI: 9.4701 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.7 | 1.1e-16 | 2 | 33 | 19 | 50 |
HHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 19 gilKKAeELSvLCdaevaviifsstgklyeys 50 g+lKKA ELSvLC+aev+viifss+gkl+e + Bradi4g40333.1.p 2 GLLKKARELSVLCNAEVSVIIFSSQGKLHELA 33 9****************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.385 | 1 | 36 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-5 | 1 | 35 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-12 | 2 | 31 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.85E-13 | 2 | 48 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
VGLLKKAREL SVLCNAEVSV IIFSSQGKLH ELATNGYRSE VVGSQTQNRA LQSQLAEPEI 60 FLVRERDRKG LELWICQMRS TKMQIMQQEI QVLENKNRKN YMHSVFLGSP FSTHPVTNGN 120 PFFSIKFVYG YALYAGERTE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g40333.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469328 | 7e-36 | KF469328.1 Brachypodium distachyon MADS-box transcription factor 34 mRNA, complete cds. | |||
GenBank | KF469329 | 7e-36 | KF469329.1 Brachypodium distachyon MADS-box transcription factor 35 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001289799.1 | 7e-57 | MADS-box transcription factor 33 | ||||
Swissprot | Q2QW55 | 3e-36 | MAD33_ORYSJ; MADS-box transcription factor 33 | ||||
TrEMBL | A0A2K2CTG6 | 1e-100 | A0A2K2CTG6_BRADI; Uncharacterized protein (Fragment) | ||||
STRING | BRADI4G40357.1 | 3e-56 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 6e-18 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g40333.1.p |