PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g40020.1.p
Common NameBRADI_4g40020
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 739aa    MW: 83006.1 Da    PI: 6.5955
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g40020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.23.2e-24106199290
              FAR1   2 fYneYAkevGFsvrkskskkskrn.geitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       fYneYA+++GF  r+ +s++sk + + +++++fvCs+eg  +++  +     + +++r+r++ r gC+a+++v +e +++w+v+kle+ HnH+
  Bradi4g40020.1.p 106 FYNEYARRLGFPFRVGRSRRSKGTeEVVIMKRFVCSREGMYRKKLPSssslgEATRKRERMSMREGCNAMMEVIRE-SNHWVVSKLEKAHNHN 197
                       9********************76515689**********9888877778999999999***************999.9*************** PP

              FAR1  89 la 90 
                       l+
  Bradi4g40020.1.p 198 LS 199
                       97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-21106199IPR004330FAR1 DNA binding domain
PfamPF105516.4E-30292383IPR018289MULE transposase domain
PROSITE profilePS5096611.14571607IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-8573604IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-4582609IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MSFSADFGCA GEHPAQLLDP PLAARGGGDE LISDYVDCLM SLDTNARSAH NGSLDLGAPL  60
AEASSSVSAS AAGTTERDAA APAAAEDPQE PSLGMTFESD EAAKAFYNEY ARRLGFPFRV  120
GRSRRSKGTE EVVIMKRFVC SREGMYRKKL PSSSSLGEAT RKRERMSMRE GCNAMMEVIR  180
ESNHWVVSKL EKAHNHNLST CSRVGYLRAR GSLDASSDRI AMMGSDGVPF MRQNVLGEGG  240
DAQGLLDYLK KMQANDPAFF HAIQVDKNCC LMNVFWADSR AKTAYQHFGD AVTFDTTYKK  300
NKYMMPFVTF SGVNHHLQPV MFGCALLMEE TECSFVWLFE TWLTAMGGKA PCSLVTDQNR  360
AMKAAIGKVF PHTCHRFCKW HILSRTKQKL AHTYSEHPTL RDEIESCVVE SETIATFERT  420
WMSILDTYDL RKNTWLQSIY NIRQKWVPLY QMDTFSAEIS PVQKLETMND LYKKYFSMKA  480
TLEVFLTQID LSMASRYEDE AKADVDTFLN MATTKTASPI EKQAARTYTK AIFTKFQEEF  540
TESLGFIIQK TKDGCISKYN IMRDENSSDT FCVTYNASNK MAKCSCKYFE FSGILCRHIL  600
GVFIIVDSHV LPPDYFLKRW TRKARYDDLL EDNGGNHHKD ASESITSRYN ALCPDAIRCA  660
EKGSGSEAVY RAAKDILQKA YEEIIAYERD PGRVPQRDVI NINEDVTIDD AMTDDSLPDS  720
GRKVTNLLGQ FLGSSWSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g40020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193510.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020193511.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020193512.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3EWI50.0A0A0Q3EWI5_BRADI; Uncharacterized protein
STRINGBRADI4G40020.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-153FAR1-related sequence 5