PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g39415.1.p
Common NameBRADI_4g39415
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 278aa    MW: 29083.3 Da    PI: 8.6596
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g39415.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.4e-221966249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      ri+++  rqv fskRr+g++KKA+ELS+LC+a+va i+fs+ gk + +
  Bradi4g39415.1.p 19 RIDSDEARQVCFSKRRAGLFKKASELSILCGAQVAAIVFSPAGKAFSF 66
                      89*****************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.6331070IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-331069IPR002100Transcription factor, MADS-box
CDDcd002659.31E-391179No hitNo description
SuperFamilySSF554551.96E-271180IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-201232IPR002100Transcription factor, MADS-box
PfamPF003194.3E-251966IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-203247IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-204768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MPRRRPTTSL GRQKIEIRRI DSDEARQVCF SKRRAGLFKK ASELSILCGA QVAAIVFSPA  60
GKAFSFGTPS VDAVLDRFLG GAARPGGTGG GRAAGSESPV LAELIRQHAE LRAQVEVEKA  120
RAEALRKEQK ATGAAPGAPK WLDCELSEMS EPELVAFAAA LVEVQAAVQG CADQMLREAL  180
LANANARAAA TLAPAAAITS AAARMMMVPQ PGGFGFAAAS SSAEAVNGGL MEMQAQQQQQ  240
QQAMEMQAQQ NQQAMEMMIK GFSPQQGAGF LGPPPPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-161078169MEF2C
5f28_B1e-161078169MEF2C
5f28_C1e-161078169MEF2C
5f28_D1e-161078169MEF2C
6byy_A2e-161078169MEF2 CHIMERA
6byy_B2e-161078169MEF2 CHIMERA
6byy_C2e-161078169MEF2 CHIMERA
6byy_D2e-161078169MEF2 CHIMERA
6bz1_A1e-161078169MEF2 CHIMERA
6bz1_B1e-161078169MEF2 CHIMERA
6bz1_C1e-161078169MEF2 CHIMERA
6bz1_D1e-161078169MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g39415.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693461e-158KF469346.1 Brachypodium distachyon MADS-box transcription factor 52 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238576.11e-128agamous-like MADS-box protein AGL61
TrEMBLA0A0Q3J0490.0A0A0Q3J049_BRADI; Uncharacterized protein
STRINGBRADI4G39420.11e-110(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-28AGAMOUS-like 62