PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g38932.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 386aa    MW: 41140.1 Da    PI: 8.134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g38932.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.4e-16177227255
               AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       g  GVr ++ +g+++AeIrd    + k +r++lg+f t+e Aa a+++a+ + +g
  Bradi4g38932.1.p 177 GLIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFNTPEAAAMAYDQAAFSVRG 227
                       567******.**********32..2.24**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.14177235IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-20177236IPR016177DNA-binding domain
PRINTSPR003673.1E-7178189IPR001471AP2/ERF domain
PfamPF008471.0E-11179227IPR001471AP2/ERF domain
SMARTSM003801.6E-28180241IPR001471AP2/ERF domain
CDDcd000184.26E-15180237No hitNo description
Gene3DG3DSA:3.30.730.101.7E-26180235IPR001471AP2/ERF domain
PRINTSPR003673.1E-7201217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MELVAYKSWA KCLAGKQLSL LPAIRPSSLG THRNLLPPPI LSISQSQPKP EPALAVAGGR  60
FMEHLLNPPA DAAAMAATYH YGASSSPSSA FDMSDTDDMH LLNTLSLLAD MDYLDMDMDA  120
SSSSSASTST SSYHSSSASS DAGHHHHHQH AMAAPTTTAA ASPTKRRAQQ QQQPVKGLIG  180
VRKRPWGKFA AEIRDSTRKG ARVWLGTFNT PEAAAMAYDQ AAFSVRGAAA VLNYPVDRVQ  240
ESLRTLALGA DAVGGSPVLA LKRRHSIRKR SPNKKKAITA SKMMPQSQTT QQQQQQPEMK  300
TTMAASAAAA EAGVVELEDL GADYLEELLR VSDDPYSSSS MGNTNYYYQC HFHGGDDQSI  360
ITTGSGTGTA APAILFPHCY ASYSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-221802351772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g38932.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757985.10.0ethylene-responsive transcription factor ERF037-like
TrEMBLA0A0Q3EVS80.0A0A0Q3EVS8_BRADI; Uncharacterized protein
STRINGBRADI4G38930.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-40ethylene response factor 1