PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g38527.1.p | ||||||||
Common Name | BRADI_4g38527, LOC104584736 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NF-YB | ||||||||
Protein Properties | Length: 179aa MW: 19095.4 Da PI: 4.6219 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 45.7 | 1.6e-14 | 70 | 141 | 25 | 96 |
NF-YB 25 akiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 + kda e + fi ++++ a+d c++ kr+tin++d++ al ++ f ++vepl++ l+++r+ +++ Bradi4g38527.1.p 70 VIVNKDAMAAFAESARIFIHYLSATANDVCKEAKRQTINAEDVFKALDEIEFAEFVEPLRTSLEEFRNKNAA 141 35789**************************************************************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.5E-31 | 37 | 177 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-8 | 43 | 116 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.14E-25 | 44 | 175 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MAGVTKEPQA ASQGEGSKSP APAPAPAPAP AAAAAMTEAE VEELPKTIVR RLVKDKLAQI 60 AGGDEGGADV IVNKDAMAAF AESARIFIHY LSATANDVCK EAKRQTINAE DVFKALDEIE 120 FAEFVEPLRT SLEEFRNKNA ARKPPTVKKP AEKKRKLDKE VPPEDQNNAA DDAKEDED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g38527.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238535.1 | 1e-123 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | I1IT16 | 1e-122 | I1IT16_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G38527.1 | 1e-123 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 | Representative plant | OGRP7862 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 1e-36 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g38527.1.p |
Entrez Gene | 104584736 |