PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g37946.7.p
Common NameBRADI_4g37946
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 612aa    MW: 68531.3 Da    PI: 8.3219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g37946.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.7e-1413103399
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       k +t+ + + ++ +v+p   ++++ggk   s t++le ++g+  +v +   k  +r+vl++GW+ Fv+ n+++e+ +++F+ +grs+   +v+
  Bradi4g37946.7.p  13 KFMTQMHGNFKDSMVIPEWIVNHFGGK--ISGTIKLEAPNGQIHDVGV--AKEMNRTVLQSGWEAFVDVNQIQENFSLMFRWIGRSCL--KVT 99 
                       6788888999999****9999777888..6779***************..**********************************9999..999 PP

                       EE-S CS
                B3  96 vfrk 99 
                       +f++
  Bradi4g37946.7.p 100 IFDA 103
                       9986 PP
2B341.91.8e-13356448595
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..E CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelv 93 
                       l++s ++ +++lv++k +a++h  +  es+t+tl+ + g ++W  ++ +r++ ++yvl + W +F+++n+L+  D ++++   +g+ ++f+ +
  Bradi4g37946.7.p 356 LKSSVNGPHACLVISKGYATAHFPS--ESQTITLQLPGGkKKWHPRFYIRRGNSAYVLYGQWIDFARDNRLCKEDLCLLQpiIKGKgRRFTVM 446
                       45666778899***********744..6789*****99989******77999999*************************5333444555555 PP

                       EE CS
                B3  94 vk 95 
                       v+
  Bradi4g37946.7.p 447 VH 448
                       55 PP
3B337.34.9e-125356072299
                       H.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  22 faeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +a++h  +gk   +k    +  ++++W+vk+   +k+  ++ ++GW+eF  +n+L++gD ++F+l + ++  + v+++r+
  Bradi4g37946.7.p 535 HADRHlpDGK---EKVALCQAGWNKEWRVKM--HNKR--MLPGGGWREFTIDNRLQDGDLCLFELLKIEGLAMAVHIIRT 607
                       6666644222...33344456899*******..5554..7899*********************9988999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.98211104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-1712105IPR015300DNA-binding pseudobarrel domain
CDDcd100174.23E-1712102No hitNo description
PfamPF023621.6E-1213103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-1614104IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-414104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-4205273IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.52206290IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-5218283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-14344447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-16345449IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-15349448No hitNo description
SMARTSM010190.0032352453IPR003340B3 DNA binding domain
PROSITE profilePS508639.671352453IPR003340B3 DNA binding domain
PfamPF023626.1E-11356449IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-15507607IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-12508607IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.0E-6519608IPR003340B3 DNA binding domain
CDDcd100172.87E-11533606No hitNo description
PfamPF023621.0E-9534607IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884555608IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MSNPCECCKS KVKFMTQMHG NFKDSMVIPE WIVNHFGGKI SGTIKLEAPN GQIHDVGVAK  60
EMNRTVLQSG WEAFVDVNQI QENFSLMFRW IGRSCLKVTI FDANGEERIS CCAGMKHPTY  120
VEKASTNCAD ISSNSHDGTA QSSDSDGHCR EQGNKPAVES SCDEFSDYSP SESESMESDD  180
LRLSKDYVLS GRCYLTEEQE DEINAFVRKI KPEIPLLVVM MKKTPMLLPE NSKNWRCRFC  240
VRPGGRGHHL YLSKFVHDNL LREGDLCLFQ PMTGVKATKF TFMFHLLGRA GKADIDSNHG  300
SFKKKKKFLT DHQETSSKIH YILSGRCQLD KEDEVGIEAL IAELQPEIPL LVVRMLKSSV  360
NGPHACLVIS KGYATAHFPS ESQTITLQLP GGKKKWHPRF YIRRGNSAYV LYGQWIDFAR  420
DNRLCKEDLC LLQPIIKGKG RRFTVMVHLL PKARSTSRSK GRDGVLGLNS GGTETSDDSN  480
ISGYVLLGSS ARLTSAQESI VAEKVKSIQS QAPIYVAAID KSNYSNSLDF GTKGHADRHL  540
PDGKEKVALC QAGWNKEWRV KMHNKRMLPG GGWREFTIDN RLQDGDLCLF ELLKIEGLAM  600
AVHIIRTEQY S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g37946.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318792.10.0B3 domain-containing protein Os03g0620400 isoform X2
RefseqXP_024318794.10.0B3 domain-containing protein Os03g0620400 isoform X2
RefseqXP_024318795.10.0B3 domain-containing protein Os03g0620400 isoform X2
TrEMBLA0A2K2CT040.0A0A2K2CT04_BRADI; Uncharacterized protein
STRINGEMT181700.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-10B3 family protein