PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g37946.6.p
Common NameBRADI_4g37946
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 626aa    MW: 70137.4 Da    PI: 8.3363
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g37946.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.8e-1427117399
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       k +t+ + + ++ +v+p   ++++ggk   s t++le ++g+  +v +   k  +r+vl++GW+ Fv+ n+++e+ +++F+ +grs+   +v+
  Bradi4g37946.6.p  27 KFMTQMHGNFKDSMVIPEWIVNHFGGK--ISGTIKLEAPNGQIHDVGV--AKEMNRTVLQSGWEAFVDVNQIQENFSLMFRWIGRSCL--KVT 113
                       6788888999999****9999777888..6779***************..**********************************9999..999 PP

                       EE-S CS
                B3  96 vfrk 99 
                       +f++
  Bradi4g37946.6.p 114 IFDA 117
                       9986 PP
2B341.91.8e-13370462595
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..E CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelv 93 
                       l++s ++ +++lv++k +a++h  +  es+t+tl+ + g ++W  ++ +r++ ++yvl + W +F+++n+L+  D ++++   +g+ ++f+ +
  Bradi4g37946.6.p 370 LKSSVNGPHACLVISKGYATAHFPS--ESQTITLQLPGGkKKWHPRFYIRRGNSAYVLYGQWIDFARDNRLCKEDLCLLQpiIKGKgRRFTVM 460
                       45666778899***********744..6789*****99989******77999999*************************5333444555555 PP

                       EE CS
                B3  94 vk 95 
                       v+
  Bradi4g37946.6.p 461 VH 462
                       55 PP
3B337.25.1e-125496212299
                       H.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  22 faeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +a++h  +gk   +k    +  ++++W+vk+   +k+  ++ ++GW+eF  +n+L++gD ++F+l + ++  + v+++r+
  Bradi4g37946.6.p 549 HADRHlpDGK---EKVALCQAGWNKEWRVKM--HNKR--MLPGGGWREFTIDNRLQDGDLCLFELLKIEGLAMAVHIIRT 621
                       6666644222...33344456899*******..5554..7899*********************9988999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.98225118IPR003340B3 DNA binding domain
CDDcd100174.84E-1726116No hitNo description
Gene3DG3DSA:2.40.330.108.0E-1726119IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-1227117IPR003340B3 DNA binding domain
SMARTSM010191.0E-428118IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-1628118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-4219287IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.52220304IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-5232296IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-14358461IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-16359463IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-15363462No hitNo description
SMARTSM010190.0032366467IPR003340B3 DNA binding domain
PROSITE profilePS508639.671366467IPR003340B3 DNA binding domain
PfamPF023626.3E-11370463IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.4E-15521621IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-12522621IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.0E-6533622IPR003340B3 DNA binding domain
CDDcd100173.07E-11547620No hitNo description
PfamPF023621.1E-9548621IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884569622IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MRLIFLCTCK APVEMSNPCE CCKSKVKFMT QMHGNFKDSM VIPEWIVNHF GGKISGTIKL  60
EAPNGQIHDV GVAKEMNRTV LQSGWEAFVD VNQIQENFSL MFRWIGRSCL KVTIFDANGE  120
ERISCCAGMK HPTYVEKAST NCADISSNSH DGTAQSSDSD GHCREQGNKP AVESSCDEFS  180
DYSPSESESM ESDDLRLSKD YVLSGRCYLT EEQEDEINAF VRKIKPEIPL LVVMMKKTPM  240
LLPENSKNWR CRFCVRPGGR GHHLYLSKFV HDNLLREGDL CLFQPMTGVK ATKFTFMFHL  300
LGRAGKADID SNHGSFKKKK KFLTDHQETS SKIHYILSGR CQLDKEDEVG IEALIAELQP  360
EIPLLVVRML KSSVNGPHAC LVISKGYATA HFPSESQTIT LQLPGGKKKW HPRFYIRRGN  420
SAYVLYGQWI DFARDNRLCK EDLCLLQPII KGKGRRFTVM VHLLPKARST SRSKGRDGVL  480
GLNSGGTETS DDSNISGYVL LGSSARLTSA QESIVAEKVK SIQSQAPIYV AAIDKSNYSN  540
SLDFGTKGHA DRHLPDGKEK VALCQAGWNK EWRVKMHNKR MLPGGGWREF TIDNRLQDGD  600
LCLFELLKIE GLAMAVHIIR TEQYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g37946.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318791.10.0B3 domain-containing protein Os03g0620400 isoform X1
TrEMBLA0A2K2CT100.0A0A2K2CT10_BRADI; Uncharacterized protein
STRINGEMT181700.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-10B3 family protein