PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g37760.1.p | ||||||||
Common Name | BRADI_4g37760, LOC104585144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 153aa MW: 16499.2 Da PI: 8.2648 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2.1e-05 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ Fs++ L H++ H Bradi4g37760.1.p 44 FSCNYCHRKFSSSQALGGHQNAH 66 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.4E-6 | 33 | 69 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.96E-6 | 41 | 71 | No hit | No description |
Pfam | PF13912 | 1.4E-5 | 44 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.489 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MERRHQLQYG GVSLDLRLEP TYRPGPAASP AADHGRDHQR EEAFSCNYCH RKFSSSQALG 60 GHQNAHKLER TLAKRNNSRL PHLAAEAAPA SSSSSSRPAA AVVDQSWLHG SGELWAYRAS 120 AAETVVSGWA MTTAAGRNYG EEAAEMDLSL KL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g37760.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137592 | 3e-38 | AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence. | |||
GenBank | AP005090 | 3e-38 | AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04. | |||
GenBank | AP014965 | 3e-38 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 3e-38 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239446.1 | 1e-108 | zinc finger protein 2 | ||||
TrEMBL | I1ISR6 | 1e-107 | I1ISR6_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G37760.1 | 1e-107 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24625.1 | 2e-16 | zinc finger protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g37760.1.p |
Entrez Gene | 104585144 |