PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g37540.2.p
Common NameBRADI_4g37540, LOC100834360
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 534aa    MW: 55687.9 Da    PI: 9.7454
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g37540.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-056688123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k F r  nL+ H r H
  Bradi4g37540.2.p 66 FVCEVCNKGFQREQNLQLHRRGH 88
                      89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.2E-66588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.91E-76588No hitNo description
SMARTSM003550.00416688IPR015880Zinc finger, C2H2-like
PfamPF121713.4E-56688IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0946688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355310107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.91E-7137162No hitNo description
SMARTSM00355210142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MAAASSAHFF GLADTQMQPA VSNSVQPQPP AAAPAPKKKR NQPGNPNPDA EVIALSPRSL  60
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPK ETRRRVYLCP EPTCVHHDPA  120
RALGDLTGIK KHYCRKHGEK KWKCDKCAKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAQESARM PPIGAGLYGG SGNMQALGLS GMSPQMPSGF VPDQAGSGQS  240
SDVLHLGGGN GAAQFEHIMG TSSAAGSSMF RPSQASSPFY LGGAQEFAED SHRSHGHGGG  300
SSLLHGKPAA AFHGLMQLPD QHQGSSSSNN SNNNNGGSNN SNLLNLGFFP GNGQDARFVF  360
QNQFNSNGNA NGNGENGLLG GIGIGAGGSF PSIFNNNSSE PSGGLPQMSA TALLQKAAQM  420
GATTSSHNVG GSAASSLLRG AGSRGDQGGS SSSSAAAMSE RQHQQSFQNL IMNSLASGGG  480
GVFPGVDDGK LSTRDFLGVG AGMVQAGMSA MGPPRRQGAA GLHIGSLDPA EMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-35138200365Zinc finger protein JACKDAW
5b3h_F8e-35138200365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g37540.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3545620.0AK354562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008H21.
GenBankAK3574010.0AK357401.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578615.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_010238483.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024319043.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLI1ISN80.0I1ISN8_BRADI; Uncharacterized protein
STRINGBRADI4G37540.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-113C2H2-like zinc finger protein