PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g37318.1.p
Common NameBRADI_4g37318, LOC100828326
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 256aa    MW: 28474.7 Da    PI: 4.9294
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g37318.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.43.2e-5461411128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePwdL  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++
  Bradi4g37318.1.p   6 LPPGFRFHPTDEELVNYYLKRKIHGQHIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRR 97 
                       79****************************.99**************84335556888*********************************** PP

               NAM  92 vlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v+++       + +++g+kktLv+y+grap+g++tdWvmheyrl
  Bradi4g37318.1.p  98 VMQHhggggggGVRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 141
                       ***977766555555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-614165IPR003441NAC domain
PROSITE profilePS5100559.5316165IPR003441NAC domain
PfamPF023653.8E-307141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKIHG QHIELDIIPE VDLYKCEPWD LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVMQ HHGGGGGGGV RAIGMKKTLV  120
YYRGRAPQGV RTDWVMHEYR LDDKQDSDDA MAIQDTYALC RVFKKNAICA EVEELQEGQC  180
SMALLEGACR QLLASGSNSQ EYQTPSPDVP VGSTSGGGDA DADDDKDDSW MQFISDDAWC  240
SSAAEESTSC VALAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-52216611169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g37318.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2514930.0AK251493.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf127o16, mRNA sequence.
GenBankAK3595070.0AK359507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1098E06.
GenBankAK3610300.0AK361030.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130O02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576809.10.0NAC domain-containing protein 86
SwissprotQ9FFI53e-84NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A0Q3EV660.0A0A0Q3EV66_BRADI; Uncharacterized protein
STRINGPavir.Bb02627.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-120NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]