PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g37147.2.p

Common Name

BRADI_4g37147, LOC100825769

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 904aa MW: 99553.9 Da PI: 7.4515

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g37147.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.4e-29	587	637	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Bradi4g37147.2.p 587 EKTVSLQVLRQYFAGSLKDAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 637 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.484	576	657	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-25	589	637	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-20	795	891	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.6E-23	804	886	No hit	No description
SMART	SM00666	7.0E-18	805	888	IPR000270	PB1 domain
PROSITE profile	PS51745	20.199	805	888	IPR000270	PB1 domain
Pfam	PF00564	1.5E-14	806	886	IPR000270	PB1 domain
CDD	cd06407	2.87E-41	806	886	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 904 aa Download sequence Send to blast
MMCSLLLPAP FNPNTSTSDT KIFFPRLPPS NTSCFTQDVQ PTMLLDSQQE RRNSEGSFTY 60 MEEGDAHPSI SVARTASSEG AAVDFDLLEQ LLSGDNAWLE VATNASRSPN FFASPCTFLS 120 DATTTTTTPA SANNNLWIQS SSTFRQRLDQ ALAYIEETQR DTDVLVQLWM PVKSNDGQLV 180 LTTSGQPFTL DKSSESLKRF RDVSTHYQFS ADVASESSPV GLPGRVFIGK LPEWSPDVRY 240 FTSYEYPRVN HAQDLDVHGT MGLPVFEKGN YSCLGVMELI MTRQKLNFTS EINNICSALQ 300 AVNLRSTEVS SIPRTKFNSA SYKDALPEIL EVLRAACITH KLPLAQTWVT CDQQGKRGSR 360 HSDENYRYCI STIDAACYVN DPCMQNFHYS CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS 420 STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GTADFVLEFF LPTDCEALEE QKAVLDSLSG 480 TMRSVCQTLR VVTDKEMEDE AMLEMNELNS FGPKGKNKVK EFSFGGKATE HREEASWTSL 540 AGTSQKESDL AELSIHGMFS PGGQGSSLAG VQTTAQGSKG KRRTKTEKTV SLQVLRQYFA 600 GSLKDAAKNL GVCPTTLKRI CRQHGINRWP SRKIKKVDHS LRKLQQIIDS VHGGETAFQL 660 NNLYKDLTNT SVSSDNNLSG SITVPLTKQS NLTEFEKHRR HRLSNNAPST SHSHSSCSQS 720 SDSSPSCSGG ATKDSPPAGV DLMKSGSHVR HNPIQTLQAE NALINGHISV QEARGDLLHN 780 VNQKAIGGQH SSRSPSPPKQ NSDIGMRVKA TFGSEKVRFR LKPESGFQEL KQEMARRLSI 840 VDTSSLIVKY LDDDSEWVLM TCDADLQECL HVYKLANIQT VKISIHLAAN PETKVTVGHT 900 GLS*

Sequence ? help Back to Top

Protein Sequence Length: 904 aa Download sequence Send to blast

MMCSLLLPAP FNPNTSTSDT KIFFPRLPPS NTSCFTQDVQ PTMLLDSQQE RRNSEGSFTY  60
MEEGDAHPSI SVARTASSEG AAVDFDLLEQ LLSGDNAWLE VATNASRSPN FFASPCTFLS  120
DATTTTTTPA SANNNLWIQS SSTFRQRLDQ ALAYIEETQR DTDVLVQLWM PVKSNDGQLV  180
LTTSGQPFTL DKSSESLKRF RDVSTHYQFS ADVASESSPV GLPGRVFIGK LPEWSPDVRY  240
FTSYEYPRVN HAQDLDVHGT MGLPVFEKGN YSCLGVMELI MTRQKLNFTS EINNICSALQ  300
AVNLRSTEVS SIPRTKFNSA SYKDALPEIL EVLRAACITH KLPLAQTWVT CDQQGKRGSR  360
HSDENYRYCI STIDAACYVN DPCMQNFHYS CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS  420
STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GTADFVLEFF LPTDCEALEE QKAVLDSLSG  480
TMRSVCQTLR VVTDKEMEDE AMLEMNELNS FGPKGKNKVK EFSFGGKATE HREEASWTSL  540
AGTSQKESDL AELSIHGMFS PGGQGSSLAG VQTTAQGSKG KRRTKTEKTV SLQVLRQYFA  600
GSLKDAAKNL GVCPTTLKRI CRQHGINRWP SRKIKKVDHS LRKLQQIIDS VHGGETAFQL  660
NNLYKDLTNT SVSSDNNLSG SITVPLTKQS NLTEFEKHRR HRLSNNAPST SHSHSSCSQS  720
SDSSPSCSGG ATKDSPPAGV DLMKSGSHVR HNPIQTLQAE NALINGHISV QEARGDLLHN  780
VNQKAIGGQH SSRSPSPPKQ NSDIGMRVKA TFGSEKVRFR LKPESGFQEL KQEMARRLSI  840
VDTSSLIVKY LDDDSEWVLM TCDADLQECL HVYKLANIQT VKISIHLAAN PETKVTVGHT  900
GLS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g37147.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358600	0.0	AK358600.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1079K24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010238468.1	0.0	protein NLP1 isoform X1
TrEMBL	A0A0Q3EV32	0.0	A0A0Q3EV32_BRADI; Uncharacterized protein
STRING	BRADI4G37147.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Bradi4g37147.2.p
Entrez Gene	100825769