PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g37147.1.p
Common NameBRADI_4g37147, LOC100825769
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 844aa    MW: 92782.3 Da    PI: 7.5768
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g37147.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.85e-29527577252
            RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
  Bradi4g37147.1.p 527 EKTVSLQVLRQYFAGSLKDAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 577
                       799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.484516597IPR003035RWP-RK domain
PfamPF020421.7E-25529577IPR003035RWP-RK domain
SuperFamilySSF542773.27E-20735831No hitNo description
Gene3DG3DSA:3.10.20.2402.4E-23744826No hitNo description
SMARTSM006667.0E-18745828IPR000270PB1 domain
PROSITE profilePS5174520.199745828IPR000270PB1 domain
CDDcd064073.35E-41746826No hitNo description
PfamPF005641.4E-14746826IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MEEGDAHPSI SVARTASSEG AAVDFDLLEQ LLSGDNAWLE VATNASRSPN FFASPCTFLS  60
DATTTTTTPA SANNNLWIQS SSTFRQRLDQ ALAYIEETQR DTDVLVQLWM PVKSNDGQLV  120
LTTSGQPFTL DKSSESLKRF RDVSTHYQFS ADVASESSPV GLPGRVFIGK LPEWSPDVRY  180
FTSYEYPRVN HAQDLDVHGT MGLPVFEKGN YSCLGVMELI MTRQKLNFTS EINNICSALQ  240
AVNLRSTEVS SIPRTKFNSA SYKDALPEIL EVLRAACITH KLPLAQTWVT CDQQGKRGSR  300
HSDENYRYCI STIDAACYVN DPCMQNFHYS CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS  360
STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GTADFVLEFF LPTDCEALEE QKAVLDSLSG  420
TMRSVCQTLR VVTDKEMEDE AMLEMNELNS FGPKGKNKVK EFSFGGKATE HREEASWTSL  480
AGTSQKESDL AELSIHGMFS PGGQGSSLAG VQTTAQGSKG KRRTKTEKTV SLQVLRQYFA  540
GSLKDAAKNL GVCPTTLKRI CRQHGINRWP SRKIKKVDHS LRKLQQIIDS VHGGETAFQL  600
NNLYKDLTNT SVSSDNNLSG SITVPLTKQS NLTEFEKHRR HRLSNNAPST SHSHSSCSQS  660
SDSSPSCSGG ATKDSPPAGV DLMKSGSHVR HNPIQTLQAE NALINGHISV QEARGDLLHN  720
VNQKAIGGQH SSRSPSPPKQ NSDIGMRVKA TFGSEKVRFR LKPESGFQEL KQEMARRLSI  780
VDTSSLIVKY LDDDSEWVLM TCDADLQECL HVYKLANIQT VKISIHLAAN PETKVTVGHT  840
GLS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g37147.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3586000.0AK358600.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1079K24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758418.10.0protein NLP1 isoform X2
TrEMBLA0A0Q3EV320.0A0A0Q3EV32_BRADI; Uncharacterized protein
STRINGBRADI4G37147.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein