PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g36233.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 816aa    MW: 94865.5 Da    PI: 9.3809
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g36233.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.23.1e-1492206291
              FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk........................tekerrtraetrtgCkaklkv 68 
                       fYn+YA+ vGFs +k+ +++     + ++t+ t++C++  k   ++                           +k r++++ + t+C+a+++v
  Bradi4g36233.2.p  92 FYNTYASIVGFSAKKAGNYHCrgAVDSKTTRCTYRCNRAVKIVGKEILeerrkrrkqnrkknnksgvscdaqIKKPRNKNTIKITDCHATMVV 184
                       9***************999986678899**********8765433322344567889999*********998888899999************ PP

              FAR1  69 kkekdgkwevtkleleHnHelap 91 
                       +++ ++kw+vt++el+HnH+l+p
  Bradi4g36233.2.p 185 TLK-EDKWVVTNIELQHNHALSP 206
                       ***.9***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-1392206IPR004330FAR1 DNA binding domain
PfamPF105514.3E-32326420IPR018289MULE transposase domain
PROSITE profilePS509669.532610646IPR007527Zinc finger, SWIM-type
PfamPF044343.9E-4614646IPR007527Zinc finger, SWIM-type
SMARTSM005755.5E-5621648IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MANKADKSID SENLSVITDG VQQQATGQTH RYEKQQAVGD PPAVEHLSRE DIENYLKNET  60
VLASQSYSQE VRGQHVPHIN MSFCSDAEAF VFYNTYASIV GFSAKKAGNY HCRGAVDSKT  120
TRCTYRCNRA VKIVGKEILE ERRKRRKQNR KKNNKSGVSC DAQIKKPRNK NTIKITDCHA  180
TMVVTLKEDK WVVTNIELQH NHALSPPGEA KFPRSHKHMT EEEKLLIRTM NSVKLPSRKI  240
MAILAGFKGR MSALPYTKKD VSNYRTTIRN ESNQNDMMMV IEFFRKRQME DPRFYYAFRV  300
DDEHKVQNIF WADGNCRKFY DLYGDCISFD TTYKTNKYNL SFAPFVGITG HANNCLFACA  360
ILQNETVETF TWLFEEFLQC MGGKMPLTII TDQDVARKQA IPNVFTQTKH RNCLFHIKKK  420
AEEKCARCFA TRRTLHIEFN DIINKSQTEE EFEALWPAMM RKYKVENIKY FQHMWEIRKN  480
FVPVYFKKDF FPFIHSTARS DGTNAIFKDN VGSTYSIISF LGEYQRISKS IVEKEREQDS  540
KTRTTKPNLW AGPELELQAA KLYNRNIFYK FQKQLKMTQQ VHVEEIEKNV SYQVYKSSML  600
AELDFRERKF MVMVDWANED ISCICVRFQK DGMLCCHALR VLLHLNILVL PEKYYIQRWR  660
QAENVEARDK QYNVPLELMT ENSHFRKINE IRKEAQDKHK QTHTSQHDVD EQPPGETFPE  720
NSTTAGHGPE DMYKEPDIAK SKGHPKVAGR QKTIVEEIFT KQRITCSHCG EHDHNIKTYK  780
KLAIDKESLQ KLKGGRKTKL GTVIIDLILS GCSFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g36233.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757844.20.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_024318808.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_024318809.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2CSL00.0A0A2K2CSL0_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-93FAR1-related sequence 5