PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g36030.1.p

Common Name

BRADI_4g36030, LOC100836378

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

SRS

Protein Properties

Length: 344aa MW: 34816.3 Da PI: 8.5049

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g36030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	216.4	6.4e-67	113	262	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 g+ sCqdCGnqakkdC+h+RCRtCCksrgf CathvkstWvpa+krrerqqql a++++aa + ++ +++ + + +++ + ++ ++ss+++ Bradi4g36030.1.p 113 GGLSCQDCGNQAKKDCSHQRCRTCCKSRGFACATHVKSTWVPASKRRERQQQLLALAASAAMAGPSSGDRDPSK-RPRARISRTTPTTSSGDQ 204 6789***********************************************999888877665555555544.46777888889999 PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ + ++++P+evsseavfrcvr++ vd +e+elaYqt+vsigGhvfkGiL+d G+++ Bradi4g36030.1.p 205 QMVTVAERFPREVSSEAVFRCVRLGPVDVAEAELAYQTTVSIGGHVFKGILHDVGANN 262 *****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.0E-63	114	261	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.8E-26	116	158	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.7E-22	212	259	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MAGFPLGGGG GGGGSSPAAP SSSSAHHHHH HHQPSSADVS AFLYTTASRG GGFQLWGQTQ 60 PQHEQQQQLT HPFYASNLIR FAPDPDDLPS AAAHSLAGGA SSSTSSRGGG AGGGLSCQDC 120 GNQAKKDCSH QRCRTCCKSR GFACATHVKS TWVPASKRRE RQQQLLALAA SAAMAGPSSG 180 DRDPSKRPRA RISRTTPTTS SGDQQMVTVA ERFPREVSSE AVFRCVRLGP VDVAEAELAY 240 QTTVSIGGHV FKGILHDVGA NNNAAGASAA AVCGGGSGDY QFRLTGDVSP PSSAAAAGGE 300 AAGGGGGGNV VASSAVVMDP YPTPGLYGSF PAGAPFFHGH PRQ*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MAGFPLGGGG GGGGSSPAAP SSSSAHHHHH HHQPSSADVS AFLYTTASRG GGFQLWGQTQ  60
PQHEQQQQLT HPFYASNLIR FAPDPDDLPS AAAHSLAGGA SSSTSSRGGG AGGGLSCQDC  120
GNQAKKDCSH QRCRTCCKSR GFACATHVKS TWVPASKRRE RQQQLLALAA SAAMAGPSSG  180
DRDPSKRPRA RISRTTPTTS SGDQQMVTVA ERFPREVSSE AVFRCVRLGP VDVAEAELAY  240
QTTVSIGGHV FKGILHDVGA NNNAAGASAA AVCGGGSGDY QFRLTGDVSP PSSAAAAGGE  300
AAGGGGGGNV VASSAVVMDP YPTPGLYGSF PAGAPFFHGH PRQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g36030.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757670.1	0.0	protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	9e-51	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	I1IS50	0.0	I1IS50_BRADI; Uncharacterized protein
STRING	BRADI4G36030.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124
Representative plant	OGRP1872	11	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-42	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Bradi4g36030.1.p
Entrez Gene	100836378

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]