PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g35910.1.p | ||||||||
Common Name | BRADI_4g35910, LOC100821150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 244aa MW: 26668.5 Da PI: 4.7357 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.8e-19 | 31 | 83 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++eq++ Le++F + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k Bradi4g35910.1.p 31 KKRFSEEQIKSLESMFSTQAKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 83 567*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.1 | 1.1e-38 | 30 | 121 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+eq+k+LE++F+++ kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L+k++ +L ++l++ Bradi4g35910.1.p 30 NKKRFSEEQIKSLESMFSTQAKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLERQYAALRDDYDALLLSYESLKKDKLALLDQLEK 121 69*************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.27E-19 | 12 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.746 | 25 | 85 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-19 | 25 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-15 | 27 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.68E-16 | 31 | 86 | No hit | No description |
Pfam | PF00046 | 9.1E-17 | 31 | 83 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 8.0E-6 | 56 | 65 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 60 | 83 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.0E-6 | 65 | 81 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-11 | 85 | 126 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEGEDDGGDW LMPSAGGGGG NKGGGKDCCN KKRFSEEQIK SLESMFSTQA KLEPRQKLQL 60 ARELGLQPRQ VAIWFQNKRA RWKSKQLERQ YAALRDDYDA LLLSYESLKK DKLALLDQLE 120 KLTEMLREPG GGKYGGNAGE SAGMKEELVV DDGGAKLYNN SVSEQGCKLS LFGDDDDAGL 180 FLRPAASQPA HDGGGFTASG PAEYQQHSSS SSFPFHSSWP STTTENMTTC SSSQWWEFES 240 LSE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g35910.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT224374 | 1e-108 | KT224374.1 Triticum aestivum cultivar RAC875 HDZipI-3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578488.1 | 1e-178 | homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q651Z5 | 9e-85 | HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q9XH35 | 9e-85 | HOX6_ORYSI; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | I1IS35 | 1e-177 | I1IS35_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G35910.1 | 1e-178 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7873 | 34 | 48 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 7e-28 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g35910.1.p |
Entrez Gene | 100821150 |
Publications ? help Back to Top | |||
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